Density Maps and Large Molecular Assemblies

Demonstration using GroEL cryo-EM density map and crystal structure.

emd_1080.map 1oel.pdb

Biology

GroEL is a complex of 14 identical proteins forming a barrel with a large cavity inside. Misfolded proteins are refolded inside this barrel. After a protein enters the barrel, a 7 protein complex called GroES caps one end and a large conformational change occurs requiring hydrolysis of 7 ATP molecules.

Demonstration

Density map: contouring, slicing and coloring.

Crystal structure: alignment with density, symmetry matrices, b-factors