|
|
addHeaders
|
addHeaders ( self, headers )
|
|
|
headerDisplayOrder
|
headerDisplayOrder ( self )
|
|
|
bboxList
|
bboxList (
self,
line1,
line2,
pos1,
pos2,
coverGaps=None,
)
|
|
|
showHeaders
|
showHeaders ( self, headers )
|
|
|
updateNumberings
|
updateNumberings ( self )
|
|
|
setRulerDisplay
|
setRulerDisplay ( self, showRuler )
|
|
|
seeBlocks
|
seeBlocks ( self, blocks )
|
|
|
setRightNumberingDisplay
|
setRightNumberingDisplay ( self, showNumbering )
|
|
|
clustalConsensusChars
|
clustalConsensusChars ( self, offset )
|
|
|
addSeqs
|
addSeqs ( self, seqs )
|
|
|
realign
|
realign (
self,
seqs,
offset=None,
)
|
|
|
__init__
|
__init__ (
self,
parent,
mav,
seqs,
)
|
|
|
saveEPS
|
saveEPS (
self,
fileName,
colorMode,
rotate,
extent,
hideNodes,
)
|
|
|
hideHeaders
|
hideHeaders ( self, headers )
|
|
|
boundedBy
|
boundedBy (
self,
x1,
y1,
x2,
y2,
)
|
|
|
showNodes
|
showNodes ( self, show )
|
|
|
assocSeq
|
assocSeq ( self, aseq )
|
|
|
setColorFunc
|
setColorFunc ( self, coloring )
|
|
|
setClustalParams
|
setClustalParams (
self,
categories,
colorings,
)
|
|
|
recolor
|
recolor ( self, seq )
|
|
|
showTree
|
showTree ( self, show )
|
|
|
deleteHeaders
|
deleteHeaders ( self, headers )
|
Exceptions
|
|
|
ValueError( "Cannot delete builtin header" " sequence" )
ValueError( "Cannot delete an alignment sequence" )
|
|
|
|
usePhyloTree
|
usePhyloTree (
self,
tree,
callback=None,
)
|
|
|
shouldWrap
|
shouldWrap ( self )
|
|
|
refresh
|
refresh (
self,
seq,
left=None,
right=None,
updateAttrs=None,
)
|
|
|
setLeftNumberingDisplay
|
setLeftNumberingDisplay ( self, showNumbering )
|
|
|
lineWidthFromPrefs
|
lineWidthFromPrefs ( self )
|
|
|
activeNode
|
activeNode ( self )
|
|