set_molecule_xform ( self )

Set molecule transform to match surface model transform.

color ( self )

set_atom_colors ( self )

__init__ (
        self,
        lan_chain,
        xform,
        surfacer,
        )

hide ( self )

show_ribbon ( self,  show )

position_chain_atoms ( self )

Position atoms by applying transform to original chain atom positions.

osl_name ( self )

surface_model_closed ( self )

surface_shown ( self )

remove_surface ( self )

molecule ( self,  load=None )

move_piece ( self,  xform )

Transform is in local coordinates.

set_color ( self,  rgba=None )

set_ribbon_colors ( self )

show_surface (
        self,
        show,
        surf_params=None,
        )

resurface ( self,  surf_params )

surface_model_created ( self )

set_xform ( self,  xform )

is_first_chain_of_molecule ( self )

This is used to avoid updating the molecule xform for every chain.

surface_model_initial_xform ( self )

Request that SurfaceModel initial xform matches already opened molecule.

show_atoms (
        self,
        show,
        atom_mode=None,
        bond_mode=None,
        )

show_style (
        self,
        style,
        params=None,
        )

show_only_style (
        self,
        style,
        params=None,
        )

molecule_loaded_cb ( self )

delete ( self )