HappyDoc Generated Documentation ./chimera

. / chimera 

Functions   
  deleteRemoveHandler 
deleteRemoveHandler ( self,  handler )
  list 
list (
        self,
        id=None,
        subid=None,
        modelTypes=None,
        hidden=None,
        all=None,
        )
  runCommand 
runCommand ( *args,  *kw )

convenience for programming...

  addAddHandler 
addAddHandler (
        self,
        func,
        data,
        )
  registerPostGraphicsFunc 
registerPostGraphicsFunc ( func )
  ionLike 
ionLike ( a )
  close 
close (
        self,
        models,
        checkForChanges=None,
        )
  makeLongBondsDashed 
makeLongBondsDashed ( models )
  open 
open (
        self,
        filename,
        type=None,
        baseId=None,
        subid=None,
        sameAs=None,
        shareXform=None,
        hidden=None,
        defaultType=None,
        prefixableType=None,
        checkForChanges=None,
        noprefs=None,
        *args,
        *kw,
        )
Exceptions   

ValueError, "unknown default type"
UserError( "Compressed %s files are not handled automatically.\n" "You need to decompress such files manually before using them." % type )
ValueError, "Unknown model type"

  findfile 
findfile ( filename,  category=None )
Exceptions   

IOError( errno.ENOENT, os.strerror( errno.ENOENT ), filename )

  isModel 
isModel ( obj )
  testDrawMode 
testDrawMode (
        e,
        op,
        value,
        )

add draw mode testing capability to OSL

  categorizeSurface 
categorizeSurface ( *args )
  makePseudoBondsToMetals 
makePseudoBondsToMetals ( models )
  testElement 
testElement (
        e,
        op,
        value,
        )

add element testing capability to OSL

Exceptions   

SyntaxError, 'comma not allowed in element name'

  add 
add (
        self,
        models,
        baseId=None,
        subid=None,
        sameAs=None,
        shareXform=None,
        hidden=None,
        checkForChanges=None,
        )
  registerOSLTests 
registerOSLTests ()
  deleteAddHandler 
deleteAddHandler ( self,  handler )
  makePythonAtomsBondsResidues 
makePythonAtomsBondsResidues ( models )
  testColor 
testColor (
        c,
        op,
        s,
        )

import oslParser

add color testing capability to OSL

Exceptions   

SyntaxError( "RGBA values must be floating point" )
SyntaxError( "RGBA can be at most 4 numbers" )

  addOpenFinishedHandler 
addOpenFinishedHandler (
        self,
        func,
        data,
        )
  addRemoveHandler 
addRemoveHandler (
        self,
        func,
        data,
        )
  addModelClosedCallback 
addModelClosedCallback ( model,  callback )
  closeAllModels 
closeAllModels (
        self,
        trigger=None,
        closure=None,
        triggerData=None,
        )

close non-hidden models first, so that "internal chain" pseudobond groups can get removed by callbacks from the C++ layer. Then close all remaining models.

also, delay closure to the end of APPQUIT triggers, so that other modules have opportunity to de-register from model- closing triggers via APPQUIT

  selectionOperation 
selectionOperation ( sel )
  checkKsdssp 
checkKsdssp (
        trigName,
        myData,
        models,
        )
  countAtomsAndResidues 
countAtomsAndResidues ( models )
  closeSession 
closeSession ()
  remove 
remove ( self,  models )
  systemPDBdir 
systemPDBdir ()
  initializeGraphics 
initializeGraphics ()
  oslLevel 
oslLevel ( obj )
  delOpenFinishedHandler 
delOpenFinishedHandler ( self,  handler )
Classes   

UserError

ChimeraSystemExit

CancelOperation

LimitationError

NotABug

ChimeraExit

NonChimeraError

FileInfo

Python files   

HighlightLens.py

HtmlText.py

Inspector.py

LensInspector.py

LensTreeNode.py

SearchDocs.py

Sequence.py

SubprocessMonitor.py

TreeWidget.py

Ttk.py

WizShell.py

WriteSelDialog.py

ZoneDialog.py

ZoomHeight.py

actions.py

appleevents.py

baseDialog.py

bgprefs.py

bondGeom.py

chimage.py

colorTable.py

coloreditor.py

dialogs.py

elements.py

exportDialog.py

exports.py

fetch.py

gprof.py

help.py

idatm.py

initprefs.py

lenses.py

match.py

misc.py

molEdit.py

mousemodes.py

oslLexer.py

oslParser.py

oslUtil.py

pbgPanel.py

preset.py

printer.py

register.py

registration.py

replyobj.py

resCode.py

specifier.py

splash.py

statusline.py

texture.py

tkgui.py

tkoptions.py

toolbar.py

triggerSet.py

update.py

version.py

viewing.py

widgets.py

writeSel.py

Subdirectories   

Icons

extension

images

preferences

selection

session


This document was automatically generated Fri May 30 21:13:51 2008 by HappyDoc version 3.1