preset apply pub 3;repr cpk;show;focus
from MultAlignViewer.MAViewer import MAViewer
from chimera.extension import manager
mav = [inst for inst in manager.instances if isinstance(inst, MAViewer)][-1]
if hasattr(mav, 'loadScfFile'):
mav.hideHeaders(mav.headers(shownOnly=True))
mav.usePhylogenyFile("http://www.cgl.ucsf.edu/chimera/consurf/TheTree.txt", askReorder=False)
mav.loadScfFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.scf")
mav.useColoringFile(None)
else:
mav.hideHeaders(mav.seqCanvas.headerDisplayOrder())
mav.usePhylogenyFile("http://www.cgl.ucsf.edu/chimera/consurf/TheTree.txt")
mav.regionBrowser.loadScfFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.scf")
from MultAlignViewer.prefs import RC_BLACK
mav.seqCanvas.setColorFunc(RC_BLACK)
mav.readHeaderFile("http://www.cgl.ucsf.edu/chimera/consurf/pdb1rtt_isd.hdr")