# Conservation for redoxin-seed.fasta # # conservation settings # --------------------- # style: AL2CO # AL2CO frequency estimation: independent counts # AL2CO conservation measure: sum of pairs # AL2CO averaging window: 1 # AL2CO gap fraction: 0.5 # AL2CO similarity matrix: HSDM # AL2CO matrix transformation: normalization # # Published work using AL2CO conservation measures should cite: # Pei, J. and Grishin, N.V. (2001) # AL2CO: calculation of positional conservation # in a protein sequence alignment # Bioinformatics, 17, 700-712. name: HSDM-norm 1 -0.427 8 -0.489 9 1.486 10 0.487 11 -0.111 14 1.069 16 1.803 19 0.324 20 -0.444 magenta 21 -0.05 magenta 37 -0.742 magenta 38 -0.833 magenta 39 -1.018 steel blue 40 -0.397 steel blue 41 -0.507 steel blue 42 -0.914 steel blue 43 -0.661 goldenrod 44 -0.831 goldenrod 45 0.009 goldenrod 46 -0.448 magenta 47 0.465 magenta 48 0.339 magenta 49 -0.509 magenta 50 0.262 magenta 51 0.214 magenta 59 0.105 magenta 60 0.099 goldenrod 61 0.727 goldenrod 62 0.971 steel blue 63 -0.329 steel blue 65 -0.211 steel blue 66 2.321 steel blue 67 3.338 steel blue 72 -0.888 73 -0.476 74 1.14 75 0.162 76 0.473 77 0.108 78 -0.379 79 1.18 80 0.879 81 -0.352 98 4.591 99 -0.74 100 -0.766 101 0.671 102 -0.246 103 -0.567 106 -0.734 107 0.907 108 -0.402 109 0.106 110 0.267 112 -0.286 113 0.212 114 -0.985 115 -0.46 116 -0.603 117 -0.036 118 -0.479 119 0.543 120 -0.102 121 -0.356 122 -0.709 123 2 124 -0.488 125 2.151 136 -0.729 137 -0.284 138 -0.699 139 -0.205 140 0.424 141 -0.711 142 -0.801 151 0.005 152 -0.825 153 0.381 154 -0.344 155 -0.393 156 -0.144 157 0.667 169 -0.927 170 -0.691 171 -0.569 172 -0.172 173 0.149 174 -0.61 175 0.29 177 0.503 178 -0.669 179 2.946 182 -0.573 184 -0.421 185 -0.765 186 -0.109 187 0.89 188 -0.571 189 -0.305 190 0.123 191 1.3 192 1.221 193 -0.524 194 -1.078 195 -0.254 196 -0.833 197 -1.138 198 -0.79 199 -0.863 200 -0.651 201 -0.528 202 -1.109 208 0.105 209 -0.739 210 -0.6 211 -0.008 212 0.034 213 -0.495 214 0.3 215 1.642 216 3.183 217 -0.667 218 0.321 219 0.534 220 1.156 223 -0.333 224 3.335 225 -0.511 226 -0.565 227 -1.013 228 -0.984 229 -0.795 230 -0.818 231 -0.809 232 -1.193 233 -0.736 235 -0.081 236 -0.831 243 0.389 244 -1.078 245 -0 246 -0.151 247 0.347 248 -0.767 249 -0.246 250 -0.802 251 2.83 style: numeric