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Current Plugins

News

December 20, 2010

Version 0.91 of the commandTool plugin, which provides a command-line interface to Cytoscape has been released. This version is compatible with Cytoscape 2.8. For more information, see the commandTool documentation

December 20, 2010

The nodeCharts plugin has been released. This plugin provides programmers with the ability to paint charts on nodes in Cytoscape from their plugins. nodeCharts has no user interface, but exports a number of CyCommands that can be called from other plugins. Details of the commands supported by nodeCharts are available in the nodeCharts documentation.

December 20, 2010

The bioCyc plugin has been released. This plugin provides an interface to pathway resources running version 14.5 or better of Pathway Tools. Documentation is available at the bioCycPlugin documentation page.

December 12, 2010

Cytoscape 2.8 has been released! Check it out at http://www.cytoscape.org.

March 18, 2010

Cytoscape 2.7 has been released! Check it out at http://www.cytoscape.org.

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UCSF RBVI Cytoscape News

News

December 20, 2010

Version 0.91 of the commandTool plugin, which provides a command-line interface to Cytoscape has been released. This version is compatible with Cytoscape 2.8. For more information, see the commandTool documentation

December 20, 2010

The nodeCharts plugin has been released. This plugin provides programmers with the ability to paint charts on nodes in Cytoscape from their plugins. nodeCharts has no user interface, but exports a number of CyCommands that can be called from other plugins. Details of the commands supported by nodeCharts are available in the nodeCharts documentation.

December 20, 2010

The bioCyc plugin has been released. This plugin provides an interface to pathway resources running version 14.5 or better of Pathway Tools. Documentation is available at the bioCycPlugin documentation page.

December 12, 2010

Cytoscape 2.8 has been released! Check it out at http://www.cytoscape.org.

March 18, 2010

Cytoscape 2.7 has been released! Check it out at http://www.cytoscape.org.

March 2, 2009

Cytoscape 2.6.2 has been released. This release primarily consists of bug fixes and should be fully compatible with all 2.6.x plugins. See the Release Notes for details.

You can get the release here

February 25, 2009

UCSF clusterMaker 1.6 has been released. This new version includes a significantly faster MCL implementation and several visualization enhancements.

You can see more detailed documentation of clusterMaker at http://www.cgl.ucsf.edu/cytoscape/cluster/clusterMaker.html

September 23, 2008

UCSF clusterMaker, a Cytoscape plugin for creating and visualizing clusters within Cytoscape networks has been released!

You can see more detailed documentation of clusterMaker at http://www.cgl.ucsf.edu/cytoscape/cluster/clusterMaker.html

September 19, 2008

Cytoscape 2.6.1 has been released. This release primarily consists of bug fixes and should be fully compatible with all 2.6.0 plugins.. There are no API changes, however we have added a new centralized logging facility. See *Help->Error Console* to see Cytoscape's startup messages and any warnings or errors that occur during operation.

You can get the release here