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   <span>Hello Elaine,</span>
   <br/>
   <br/>
   <span>I have been trying to save a protein-ligand complex in pdb format with the</span>
   <br/>
   <span>command line,but i haven't successful doing so. I have tried using write,</span>
   <br/>
   <span>display, select command but nothing worked.</span>
   <br/>
   <span>Steps that i followed:</span>
   <br/>
   <span>Open the NoH.pdb file in chimera</span>
   <br/>
   <span>With command line: cd /home/Desktop/test/Cmd_Tango_Dock/OUT/1abe.pdb/tmpO9IqaJ</span>
   <br/>
   <span>viewdock rigid_ranked.mol2 "Dock 4, 5 or 6"</span>
   <br/>
   <br/>
   <span>combine #0,1.1  111_#name.pdb-I used this command to save my result. If you </span>
   <span>could tell me what mistake I am making in saving the file.</span>
   <br/>
   <span><br/></span>
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   <span> </span>
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   <span>Thank You </span>
  </div> 
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   <span>Regards</span>
  </div> 
  <div>
   <span>Preet </span>
  </div>
 
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