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<p>That would be Conrad :-). We should port the script to Python 3.
<br>
</p>
<p> -- Greg<br>
</p>
<div class="moz-cite-prefix">On 2/22/2023 8:56 AM, Eric Pettersen
via Chimera-dev wrote:<br>
</div>
<blockquote type="cite"
cite="mid:10698D50-6537-4316-BB7B-CAB26AB73D2F@cgl.ucsf.edu">
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For whoever is responsible for the "createPub" script...
<div><br class="">
<blockquote type="cite" class="">
<div class="">Begin forwarded message:</div>
<br class="Apple-interchange-newline">
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">From: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class="">root <<a
href="mailto:root@cgl.ucsf.EDU"
class="moz-txt-link-freetext" moz-do-not-send="true">root@cgl.ucsf.EDU</a>><br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">Subject: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class=""><b class="">RBVI web update results</b><br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">Date: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class="">February 22, 2023 at 4:04:54 AM PST<br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">To: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class=""><a href="mailto:pett@cgl.ucsf.edu"
class="moz-txt-link-freetext" moz-do-not-send="true">pett@cgl.ucsf.edu</a><br
class="">
</span></div>
<br class="">
<div class="">
<div class="">Traceback (most recent call last):<br class="">
File "/usr/local/bin/createPub", line 188, in
<module><br class="">
main()<br class="">
File "/usr/local/bin/createPub", line 46, in main<br
class="">
htmlList = formatIds(idList, url)<br class="">
File "/usr/local/bin/createPub", line 99, in formatIds<br
class="">
output.extend(bufferPid(url, idBuffer, flush=True))<br
class="">
File "/usr/local/bin/createPub", line 109, in bufferPid<br
class="">
data = formatPubmedId(idBuffer, url)<br class="">
File "/usr/local/bin/createPub", line 124, in
formatPubmedId<br class="">
esr = eSummaryResult.eSummaryResult(data)<br class="">
File
"/usr/local/lib/python2.7/site-packages/ncbi_eutils/eSummaryResult.py",
line 43, in __init__<br class="">
raise ExpatError<br class="">
xml.parsers.expat.ExpatError<br class="">
</div>
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</blockquote>
</div>
<br class="">
<br>
<fieldset class="moz-mime-attachment-header"></fieldset>
<pre class="moz-quote-pre" wrap="">_______________________________________________
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</pre>
</blockquote>
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