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<p class="MsoNormal">Thanks! I was not aware of the Reply Log before. There was actually no need to create a Python script since the Reply Log has a save button. I have all the data now.</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best,</p>
<p class="MsoNormal">Morais</p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="border:none;padding:0in"><b>From: </b><a href="mailto:meng@cgl.ucsf.edu">Elaine Meng</a><br>
<b>Sent: </b>Thursday, March 10, 2022 9:09 PM<br>
<b>To: </b><a href="mailto:moraisbrown@outlook.com">Morais Brown</a><br>
<b>Cc: </b><a href="mailto:chimera-users@cgl.ucsf.edu">chimera-users@cgl.ucsf.edu List</a><br>
<b>Subject: </b>Re: Chimera Help Needed- Wring output of status line to file</p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">Hello,<br>
CCing chimera-users@cgl.ucsf.edu (recommended address for questions to ensure it doesn't fall through the cracks... and also because often other people know the answer when I do not)...<br>
<<a href="https://www.rbvi.ucsf.edu/chimera/docs/feedback.html">https://www.rbvi.ucsf.edu/chimera/docs/feedback.html</a>><br>
<br>
I guess you are talking about method "b" in that post? I believe the values would also go to the Reply Log in addition to the status line. You can save the Reply Log contents using a bit of python. That is beyond my expertise personally, but fortunately
is described at the bottom of this page on basic scripting:<br>
<<a href="https://www.rbvi.ucsf.edu/chimera/current/docs/ProgrammersGuide/basicPrimer.html">https://www.rbvi.ucsf.edu/chimera/current/docs/ProgrammersGuide/basicPrimer.html</a>><br>
<br>
I hope this helps,<br>
Elaine <br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Mar 10, 2022, at 5:46 PM, Morais Brown <moraisbrown@outlook.com> wrote:<br>
> <br>
> Hello, <br>
> <br>
> I followed your advice here: <a href="http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-January/007160.htmland">
http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-January/007160.htmland</a> created a script that get the rmsd values of my residues of interest using a reference structure. How do I record these RMSD values to a file so that I can plot them? I only see
them fluctuating in the status line when I play my trajectory.<br>
> <br>
> Best,<br>
> Morais<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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