<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Dear Chimera (and ChimeraX) team<br class=""><br class="">I have run a large docking experiment using several ligands to determine the best binders for further analysis in Molecular Dynamics studies and possible wetlab evaluation.<br class=""><br class="">I need to find some python example or code snippet capable of looping over hundreds of files and find several .pdb poses from a docking run and find Hydrogen bonds in each one using one receptor. <br class=""><br class="">In the process of finding the H bonds, I would like to add Hydrogens, and the protonation state is unspecified. Then at FindHBond, I want to find intermodal Hbonds and write the results to a file.<br class=""><br class="">Thanks<br class=""><br class="">Samuel<div class=""><br class=""></div><div class=""><br class=""><div class="">
<div dir="auto" style="text-align: start; text-indent: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; text-decoration: none; -webkit-text-stroke-width: 0px; font-family: Arial; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; text-align: start; text-indent: 0px;">Dr. Samuel Kyobe <br class="">Department of Medical Microbiology,<br class="">3rd floor, Pathology/Microbiology BLDG,<br class="">School of Biomedical Sciences<br class="">College of Health Sciences,<br class="">Makerere University.<br class="">Box 7072, Kampala, Uganda.<br class="">Mob: +256775468605 </div><div style="text-align: start; text-indent: 0px;">Skype: samuelkyobe</div></div></div>
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