<html xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
<meta name="Generator" content="Microsoft Word 15 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:"Cambria Math";
panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
font-size:11.0pt;
font-family:"Calibri",sans-serif;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
.MsoChpDefault
{mso-style-type:export-only;}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style>
</head>
<body lang="EN-US" link="blue" vlink="#954F72" style="word-wrap:break-word">
<div class="WordSection1">
<p class="MsoNormal">Thanks a lot Elaine!</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Shubham.</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Sent from <a href="https://go.microsoft.com/fwlink/?LinkId=550986">
Mail</a> for Windows</p>
<p class="MsoNormal"><o:p> </o:p></p>
<div style="mso-element:para-border-div;border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="border:none;padding:0in"><b>From: </b><a href="mailto:meng@cgl.ucsf.edu">Elaine Meng</a><br>
<b>Sent: </b>Monday, April 18, 2022 16:55<br>
<b>To: </b><a href="mailto:sdramgoolam@uwaterloo.ca">Shubham Devesh Ramgoolam</a><br>
<b>Cc: </b><a href="mailto:chimera-users@cgl.ucsf.edu">chimera-users@cgl.ucsf.edu</a><br>
<b>Subject: </b>Re: [Chimera-users] Command for selecting aromatic ring</p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">Hello,<br>
You can just use command:<br>
<br>
select aromatic ring<br>
<br>
...same as using menu: Select... Chemistry... functional group... aromatic ring<br>
<br>
All of the terminal entries in the Select... Chemistry menu can be used as command-line specifiers, as discussed here:<br>
<<a href="https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/atom_spec.html#builtin">https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/atom_spec.html#builtin</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Apr 18, 2022, at 1:35 PM, Shubham Devesh Ramgoolam via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:<br>
> <br>
> Hello, <br>
> I hope you are doing well.<br>
> Is there a command on chimera that will allow me to select for the atoms in aromatic rings?<br>
> I found a workaround by defining the atoms involved in the aromatic rings and then making my selection.<br>
> However, I would like to use a command (or perhaps combination of commands) from chimera to select the aromatic atoms.<br>
> Regards,<br>
> Shubham<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
</body>
</html>