<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Samuel,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>The is just basic Python. The plan would be to go to the parent folder, loop over the subfolder names, and within that loop, loop over the files. So something like:</div><div class=""><br class=""></div><div class="">os.chdir("<i class="">parent_folder_path</i><span style="font-style: normal;" class="">")</span></div><div class="">for subfolder_name in ["<i class="">folder_name1</i><span style="font-style: normal;" class="">", "</span><i class="">folder_name2</i><span style="font-style: normal;" class="">", "</span><i class="">folder_name3</i><span style="font-style: normal;" class="">",...]:</span></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>os.chdir(subfolder_name) # go into subfolder</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span><i class="">... same code as before <i class="">...</i></i></div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>os.chdir("..") # go back to parent folder</div><div class=""><br class=""></div><div class="">--Eric<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Apr 19, 2022, at 12:01 PM, Samuel Kyobe <<a href="mailto:samuelkyobe@gmail.com" class="">samuelkyobe@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi Eric<br class=""><br class="">I now have a new challenge. My files are in several folders as shown below:<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>.<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>├── 8_C_pol<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>│ ├── 247_CnA1_pol_frag_1_conf_36_out_01.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>│ ├── 247_CnA1_pol_frag_1_conf_62_out_07.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>│ └── HLA_5w6a_model_4.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>└── 94_C_vif<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span> ├── 247_CnA1_pol_frag_1_conf_36_out_01.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span> ├── 247_CnA1_pol_frag_1_conf_62_out_07.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span> └── HLA_5w6a_model_4.pdb<br class=""><br class=""><br class="">I would like to iterate through the folders and execute the commands with the original script below (only works inside one folder):<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>1<span class="Apple-tab-span" style="white-space:pre"> </span>import chimera<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>2<span class="Apple-tab-span" style="white-space:pre"> </span>import os<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>3<span class="Apple-tab-span" style="white-space:pre"> </span>import glob<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>4<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>5<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import runCommand as rc # use 'rc' as shorthand for runCommand<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>6<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import replyobj # for emitting status messages<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>7<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>8<span class="Apple-tab-span" style="white-space:pre"> </span># change to folder with data files<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>9<span class="Apple-tab-span" style="white-space:pre"> </span>os.chdir("/Volumes/Sammy/Grants/H3Africa/CAfGEN/CAfGEN_PhD_Work/Allele_mechanisms/Mini_ligands_All/Auto_chimera”)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>10<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>11<span class="Apple-tab-span" style="white-space:pre"> </span># absolute path to search all .pdb files of ligands<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>12<span class="Apple-tab-span" style="white-space:pre"> </span>path = r'*out*.pdb'<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>13<span class="Apple-tab-span" style="white-space:pre"> </span>files = glob.glob(path)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>14<span class="Apple-tab-span" style="white-space:pre"> </span>print(files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>15<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>16<span class="Apple-tab-span" style="white-space:pre"> </span>file_names = files<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>17<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>18<span class="Apple-tab-span" style="white-space:pre"> </span>for files in file_names:<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>19<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>my_mod=chimera.openModels.open('./HLA_5w6a_model_4.pdb',type="PDB")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>20<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>replyobj.status("Processing " + files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>21<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("open " + files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>22<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("addh")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>23<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>hbonds_output = files[:-4] + "hbonds.txt" # change ".pdb" to "hbonds.txt"<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>24<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("findhbond intermodel true intramodel false relax false reveal true saveFile " + hbonds_output)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>25<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("close all")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>26<span class="Apple-tab-span" style="white-space:pre"> </span># uncommenting the line below will cause Chimera to exit when the script is done<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>27<span class="Apple-tab-span" style="white-space:pre"> </span>rc("stop now")<br class=""><br class="">But I have tried the following modification but it returns errors. <br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>1<span class="Apple-tab-span" style="white-space:pre"> </span>import chimera<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>2<span class="Apple-tab-span" style="white-space:pre"> </span>import os<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>3<span class="Apple-tab-span" style="white-space:pre"> </span>import glob<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>4<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>5<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import runCommand as rc # use 'rc' as shorthand for runCommand<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>6<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import replyobj # for emitting status messages<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>7<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>8<span class="Apple-tab-span" style="white-space:pre"> </span>rootdir = '/Volumes/Sammy/Grants/H3Africa/CAfGEN/CAfGEN_PhD_Work/Allele_mechanisms/Mini_ligands_All/Auto_chimera/try/'<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>9<span class="Apple-tab-span" style="white-space:pre"> </span>for subdir, dirs, files in os.walk(rootdir):<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>10<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>12<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>for file in files:<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>13<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>print os.path.join(file)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>14<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>15<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>path = r'*out*.pdb'<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>16<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>glob.glob('*out*.pdb')<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>17<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>print(file)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>18<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>19<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>my_mod=chimera.openModels.open('./HLA_5w6a_model_4.pdb',type="PDB")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>20<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>replyobj.status("Processing " + file)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>21<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("open " + file)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>22<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("addh")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>23<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>hbonds_output = files[:-4] + "hbonds.txt" # change ".pdb" to "hbonds.txt"<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>24<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("findhbond intermodel true intramodel false relax false reveal true saveFile " + hbonds_output)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>25<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("close all”)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>26<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>27<span class="Apple-tab-span" style="white-space:pre"> </span># uncommenting the line below will cause Chimera to exit when the script is done<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>28<span class="Apple-tab-span" style="white-space:pre"> </span>rc("stop now")<br class=""><br class="">After hours of trying various options on stack overflow, I have to turn to your expert help.<br class=""><br class="">Thank you<br class=""><br class="">Samuel<br class=""><br class=""><br class=""><br class=""><br class=""><blockquote type="cite" class="">On 15 Apr 2022, at 17:03, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>> wrote:<br class=""><br class="">You need a space between saveFile and the quote that follows it.<br class=""><br class=""><blockquote type="cite" class="">On Apr 15, 2022, at 6:39 AM, Samuel Kyobe <<a href="mailto:samuelkyobe@gmail.com" class="">samuelkyobe@gmail.com</a>> wrote:<br class=""><br class="">Hi Eric<br class=""><br class="">I have modified the code:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>hbonds_output = files[:-4] + "hbonds.txt" # change ".pdb" to "hbonds.txt"<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>rc("findhbond intermodel true intramodel false relax false reveal true saveFile" + hbonds_output)<br class=""><br class="">But, the code returns the error below:<br class=""><br class="">File "/private/var/folders/y2/p069gv9n6lsf1x8w08bym32w0000gn/T/AppTranslocation/AF4918BD-D759-418D-AA97-756E6B1D941C/d/Chimera.app/Contents/Resources/share/Midas/midas_text.py", line 3396, in _parseTyped<br class=""> % typed<br class="">MidasError: No value provided for keyword 'saveFile247_CnA1_pol_frag_1_conf_36_out_01hbonds.txt'<br class=""><br class="">Not sure what could be causing the error.<br class=""><br class="">Thank you<br class=""><br class="">Samuel<br class=""><br class=""><br class=""><br class=""><br class=""><blockquote type="cite" class="">On 15 Apr 2022, at 04:02, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu" class="">pett@cgl.ucsf.edu</a>> wrote:<br class=""><br class="">Hi Samuel,<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>You know the ligand file name, so you could just modify that to make a corresponding unique output file name. So between lines 22 and 23 you could do:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span>hbonds_output = files[:-4] + “.hbonds.txt” # change “.pdb” to “.hbonds.txt”<br class=""><br class="">and your findhbond command would be rc("findhbond intermodel true intramodel false relax false reveal true saveFile “ + hbonds_output)<br class=""><br class="">—Eric<br class=""><br class=""><blockquote type="cite" class="">On Apr 14, 2022, at 6:10 AM, Samuel Kyobe via Chimera-users <<a href="mailto:chimera-users@cgl.ucsf.edu" class="">chimera-users@cgl.ucsf.edu</a>> wrote:<br class=""><br class="">Hi Elaine<br class=""><br class="">Thank you so much for your responses.<br class="">I have modified the recommended example as seen below:<br class=""><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>1<span class="Apple-tab-span" style="white-space:pre"> </span>import chimera<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>2<span class="Apple-tab-span" style="white-space:pre"> </span>import os<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>3<span class="Apple-tab-span" style="white-space:pre"> </span>import glob<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>4<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>5<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import runCommand as rc <br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>6<span class="Apple-tab-span" style="white-space:pre"> </span>from chimera import replyobj <br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>7<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>8<span class="Apple-tab-span" style="white-space:pre"> </span># change to folder with data files<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>9<span class="Apple-tab-span" style="white-space:pre"> </span>os.chdir("/Volumes/Auto_chimera")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>10<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>11<span class="Apple-tab-span" style="white-space:pre"> </span># absolute path to search all .pdb files of ligands<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>12<span class="Apple-tab-span" style="white-space:pre"> </span>path = r'./*_out_*.pdb’ # several files with output name specified as *_out_*.pdb<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>13<span class="Apple-tab-span" style="white-space:pre"> </span>files = glob.glob(path)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>14<span class="Apple-tab-span" style="white-space:pre"> </span>print(files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>15<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>16<span class="Apple-tab-span" style="white-space:pre"> </span>file_names = files<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>17<span class="Apple-tab-span" style="white-space:pre"> </span><br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>18<span class="Apple-tab-span" style="white-space:pre"> </span>for files in file_names:<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>19<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>my_mod=chimera.openModels.open('./HLA_5w6a_model_4.pdb',type="PDB")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>20<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>replyobj.status("Processing " + files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>21<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("open " + files)<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>22<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("addh")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>23<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("findhbond intermodel true intramodel false relax false reveal true saveFile")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>24<span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>rc("close all")<br class=""><span class="Apple-tab-span" style="white-space:pre"> </span><span class="Apple-tab-span" style="white-space:pre"> </span>25<span class="Apple-tab-span" style="white-space:pre"> </span>rc("stop now”)<br class=""><br class="">My current challenge is how to save the different resultant files with unique file_names (line 25).<br class=""><br class="">Is there an alternative way I can call the files names after saveFile (line 25)? Your example doesn’t not work with my modified code.<br class=""><br class="">Thank you<br class=""><br class="">Samuel<br class=""><br class=""><br class=""><br class=""><blockquote type="cite" class="">On 13 Apr 2022, at 19:04, Elaine Meng <<a href="mailto:meng@cgl.ucsf.edu" class="">meng@cgl.ucsf.edu</a>> wrote:<br class=""><br class="">Hi Samuel,<br class="">Although the first link I sent you shows Chimera commands, the second link shows how to put those commands together with Python for looping.<br class="">Elaine<br class=""><br class=""><blockquote type="cite" class="">On Apr 13, 2022, at 9:00 AM, Samuel Kyobe via Chimera-users <<a href="mailto:chimera-users@cgl.ucsf.edu" class="">chimera-users@cgl.ucsf.edu</a>> wrote:<br class=""><br class="">Dear Elaine<br class=""><br class="">The challenge I have is that the Command Index is not written for Python which I would prefer to use for looping in several files.<br class=""><br class="">I am using only Chimera I have no access to ChimeraX.<br class=""><br class="">Thank you<br class=""><br class="">Samuel<br class=""></blockquote><br class=""></blockquote><br class=""><br class="">_______________________________________________<br class="">Chimera-users mailing list: <a href="mailto:Chimera-users@cgl.ucsf.edu" class="">Chimera-users@cgl.ucsf.edu</a><br class="">Manage subscription: <a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users" class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users</a><br class=""><br class=""></blockquote><br class=""></blockquote><br class=""><br class=""></blockquote><br class=""></blockquote><br class=""><br class=""></div></div></blockquote></div><br class=""></div></body></html>