<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=windows-1255">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="rtl">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); text-align: left;" dir="ltr">
Thank you so much</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); text-align: left;" dir="ltr">
that helped me a lot!</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); text-align: left;" dir="ltr">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">and thank you for your quick response</span><br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); text-align: left;" dir="ltr">
Meital</div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="rtl"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>îàú:</b> Elaine Meng <meng@cgl.ucsf.edu><br>
<b>þþðùìç:</b> éåí ùðé 09 îàé 2022 20:55<br>
<b>þþàì:</b> Meital Bachar <meitalbachar@tauex.tau.ac.il><br>
<b>òåú÷:</b> chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu><br>
<b>þþðåùà:</b> Re: [Chimera-users] crystal contacts</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Hi Meital,<br>
If you use the command "crystalcontacts" there is an option to list the residues in the Reply Log, for example, if your structure is open as model #0 and you want to use distance 2.5 Angstroms:<br>
<br>
crystalcontacts #0 2.5 residueInfo true<br>
<br>
See command help and list of options:<br>
<<a href="https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/crystalcontacts.html">https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/crystalcontacts.html</a>><br>
<br>
If you are considering switching to ChimeraX, note that ChimeraX also has a Crystal Contacts tool and a "crystalcontacts" command with the residueInfo option.<br>
<<a href="https://rbvi.ucsf.edu/chimerax/docs/user/commands/crystalcontacts.html">https://rbvi.ucsf.edu/chimerax/docs/user/commands/crystalcontacts.html</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D. <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On May 9, 2022, at 9:55 AM, Meital Bachar via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:<br>
> <br>
> Hello,<br>
> my name is Meital and I am a Ph.D. student at the school of chemistry at Tel-Aviv university.<br>
> i am trying to identify the crystal contacts of a protein that I am studying.<br>
> and I was wondering if it is possible to get an output for the calculated crystal contacts in a way that the actual residues are listed.<br>
> appreciate a lot your response.<br>
> Meital<br>
<br>
</div>
</span></font></div>
</body>
</html>