<div dir="ltr"><b><font color="#ff0000" size="4">Please do not mind my previous messages. After sending you my email, it occurred to me that perhaps, my university's IT security system prevents such submissions. </font></b><font color="#ff0000" size="4"><b>I tried to bypass the system through my portable wifi device and using my hotspot feature on my mobile phone</b></font>.<b><font color="#ff0000" size="4"> Now everything works fine. I am sorry for this inconvenience. If I knew this earlier, I would not have sent the previous email. Thank you for your patience and understanding. </font></b><div><b><font color="#ff0000" size="4"><br></font></b></div><div><b><font color="#ff0000" size="4">I sorry for the inconvenience again. </font></b></div><div><b><font color="#ff0000" size="4"><br></font></b></div><div><b><font color="#ff0000" size="4">Regards, </font></b><br><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">---------- Forwarded message ---------<br>From: <strong class="gmail_sendername" dir="auto">Firat KURT</strong> <span dir="auto"><<a href="mailto:f.kurt@alparslan.edu.tr" target="_blank">f.kurt@alparslan.edu.tr</a>></span><br>Date: Mon, May 16, 2022 at 2:01 PM<br>Subject: question Help<br>To: <<a href="mailto:chimera-users@cgl.ucsf.edu" target="_blank">chimera-users@cgl.ucsf.edu</a>><br></div><br><br><div dir="ltr"><b><font size="4">Hi, </font></b><div><b><font size="4">I have several problems regarding running some features of and registration of chimera. </font></b></div><div><b><font size="4"><br></font></b></div><div><b><font size="4">Firstly, I am not able to do registration. It keeps giving the error message below: </font></b></div><div><br></div><div>Error reading 1yti:<br>Error during PDB fetch: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>Model 0 (AT4G26590_1_ATOPT5.pdb) appears to be a protein without secondary structure assignments.<br>Automatically computing assignments using 'ksdssp' and parameter values:<br> energy cutoff -0.5<br> minimum helix length 3<br> minimum strand length 3<br>Use command 'help ksdssp' for more information.<br>Traceback from web service request (connection setup):<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 11, in __init__<br> self._setup(serviceName, opalURL, sessionData)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 50, in _setup<br> self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__<br> self.wsdl = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open<br> d = self.fn(url, self.options)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__<br> d = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open<br> d = self.download(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 100, in download<br> return sax.parse(string=content)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py", line 133, in parse<br> sax.parse(source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 111, in parse<br> xmlreader.IncrementalParser.parse(self, source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line 123, in parse<br> self.feed(buffer)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 224, in feed<br> self._err_handler.fatalError(exc)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38, in fatalError<br> raise exception<br>SAXParseException: <unknown>:76:2: mismatched tag<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Traceback from Blastp request:<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line 362, in _initBlast<br> self.opal = OpalService(self.ServiceName)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 21, in __init__<br> raise NonChimeraError("Web service appears "<br>NonChimeraError: Web service appears to be down. See Reply Log for more details.<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Blast web service appears to be down. See Reply Log for more details.<br><br>Traceback from web service request (connection setup):<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 11, in __init__<br> self._setup(serviceName, opalURL, sessionData)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 50, in _setup<br> self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__<br> self.wsdl = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open<br> d = self.fn(url, self.options)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__<br> d = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open<br> d = self.download(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 100, in download<br> return sax.parse(string=content)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py", line 133, in parse<br> sax.parse(source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 111, in parse<br> xmlreader.IncrementalParser.parse(self, source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line 123, in parse<br> self.feed(buffer)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 224, in feed<br> self._err_handler.fatalError(exc)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38, in fatalError<br> raise exception<br>SAXParseException: <unknown>:76:2: mismatched tag<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Traceback from Blastp request:<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line 362, in _initBlast<br> self.opal = OpalService(self.ServiceName)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 21, in __init__<br> raise NonChimeraError("Web service appears "<br>NonChimeraError: Web service appears to be down. See Reply Log for more details.<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Blast web service appears to be down. See Reply Log for more details.<br><br>error Exception in Tk callback<br> Function: <bound method BugReportGUI.Submit of <BugReport.BugReportGUI.BugReportGUI object at 0x000000001A1CAFD0>> (type: <type 'instancemethod'>)<br> Module: <module 'BugReport.BugReportGUI' from 'C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.pyc'> (line: 348)<br> Args: ()<br>Traceback (innermost last):<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__<br> return apply(self.func, args)<br> File "C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.py", line 426, in Submit<br> BUG_SELECTOR, fields)<br> File "C:\Program Files\Chimera 1.16\share\CGLutil\multipart.py", line 33, in post_multipart_formdata<br> retcode, retmsg, headers = h.getreply()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in getreply<br> response = self._conn.getresponse()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in getresponse<br> response.begin()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in begin<br> version, status, reason = self._read_status()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in _read_status<br> line = self.fp.readline(_MAXLINE + 1)<br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br>error: [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>error: [Errno 10054] An existing connection was forcibly closed by the remote host<br><br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br><br>See reply log for Python traceback.<br><br><br>IOError Exception in Tk callback<br> Function: <function command at 0x00000000151E8898> (type: <type 'function'>)<br> Module: <module 'chimera.baseDialog' from 'C:\Program Files\Chimera 1.16\share\chimera\baseDialog.pyc'> (line: 447)<br> Args: ()<br>Traceback (innermost last):<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__<br> return apply(self.func, args)<br> File "C:\Program Files\Chimera 1.16\share\chimera\baseDialog.py", line 449, in command<br> getattr(s, buttonFuncName(txt))()<br> File "C:\Program Files\Chimera 1.16\share\chimera\register.py", line 294, in Register<br> file = urllib.urlopen(regURL, params)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 89, in urlopen<br> return opener.open(url, data)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 215, in open<br> return getattr(self, name)(url, data)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 351, in open_http<br> errcode, errmsg, headers = h.getreply()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in getreply<br> response = self._conn.getresponse()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in getresponse<br> response.begin()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in begin<br> version, status, reason = self._read_status()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in _read_status<br> line = self.fp.readline(_MAXLINE + 1)<br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br>IOError: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>IOError: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br><br>See reply log for Python traceback.<br></div><div><br></div><div><b><font size="4"><br></font></b></div><div><b><font size="4">Secondly, when I try to model a sequence using modeller, I am having error message in first step. When I select "Tools>sequence>sequence>balst protein" and paste the sequence of interest to the respective area, I got the error message below :</font></b></div><div><br></div><div>Error reading 1yti:<br>Error during PDB fetch: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>Model 0 (AT4G26590_1_ATOPT5.pdb) appears to be a protein without secondary structure assignments.<br>Automatically computing assignments using 'ksdssp' and parameter values:<br> energy cutoff -0.5<br> minimum helix length 3<br> minimum strand length 3<br>Use command 'help ksdssp' for more information.<br>Traceback from web service request (connection setup):<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 11, in __init__<br> self._setup(serviceName, opalURL, sessionData)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 50, in _setup<br> self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__<br> self.wsdl = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open<br> d = self.fn(url, self.options)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__<br> d = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open<br> d = self.download(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 100, in download<br> return sax.parse(string=content)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py", line 133, in parse<br> sax.parse(source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 111, in parse<br> xmlreader.IncrementalParser.parse(self, source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line 123, in parse<br> self.feed(buffer)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 224, in feed<br> self._err_handler.fatalError(exc)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38, in fatalError<br> raise exception<br>SAXParseException: <unknown>:76:2: mismatched tag<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Traceback from Blastp request:<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line 362, in _initBlast<br> self.opal = OpalService(self.ServiceName)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 21, in __init__<br> raise NonChimeraError("Web service appears "<br>NonChimeraError: Web service appears to be down. See Reply Log for more details.<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Blast web service appears to be down. See Reply Log for more details.<br><br>Traceback from web service request (connection setup):<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 11, in __init__<br> self._setup(serviceName, opalURL, sessionData)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 50, in _setup<br> self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__<br> self.wsdl = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open<br> d = self.fn(url, self.options)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__<br> d = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open<br> d = self.download(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 100, in download<br> return sax.parse(string=content)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py", line 133, in parse<br> sax.parse(source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 111, in parse<br> xmlreader.IncrementalParser.parse(self, source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line 123, in parse<br> self.feed(buffer)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 224, in feed<br> self._err_handler.fatalError(exc)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38, in fatalError<br> raise exception<br>SAXParseException: <unknown>:76:2: mismatched tag<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Traceback from Blastp request:<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line 362, in _initBlast<br> self.opal = OpalService(self.ServiceName)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 21, in __init__<br> raise NonChimeraError("Web service appears "<br>NonChimeraError: Web service appears to be down. See Reply Log for more details.<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Blast web service appears to be down. See Reply Log for more details.<br><br>error Exception in Tk callback<br> Function: <bound method BugReportGUI.Submit of <BugReport.BugReportGUI.BugReportGUI object at 0x000000001A1CAFD0>> (type: <type 'instancemethod'>)<br> Module: <module 'BugReport.BugReportGUI' from 'C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.pyc'> (line: 348)<br> Args: ()<br>Traceback (innermost last):<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__<br> return apply(self.func, args)<br> File "C:\Program Files\Chimera 1.16\share\BugReport\BugReportGUI.py", line 426, in Submit<br> BUG_SELECTOR, fields)<br> File "C:\Program Files\Chimera 1.16\share\CGLutil\multipart.py", line 33, in post_multipart_formdata<br> retcode, retmsg, headers = h.getreply()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in getreply<br> response = self._conn.getresponse()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in getresponse<br> response.begin()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in begin<br> version, status, reason = self._read_status()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in _read_status<br> line = self.fp.readline(_MAXLINE + 1)<br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br>error: [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>error: [Errno 10054] An existing connection was forcibly closed by the remote host<br><br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br><br>See reply log for Python traceback.<br><br><br>IOError Exception in Tk callback<br> Function: <function command at 0x00000000151E8898> (type: <type 'function'>)<br> Module: <module 'chimera.baseDialog' from 'C:\Program Files\Chimera 1.16\share\chimera\baseDialog.pyc'> (line: 447)<br> Args: ()<br>Traceback (innermost last):<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__<br> return apply(self.func, args)<br> File "C:\Program Files\Chimera 1.16\share\chimera\baseDialog.py", line 449, in command<br> getattr(s, buttonFuncName(txt))()<br> File "C:\Program Files\Chimera 1.16\share\chimera\register.py", line 294, in Register<br> file = urllib.urlopen(regURL, params)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 89, in urlopen<br> return opener.open(url, data)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 215, in open<br> return getattr(self, name)(url, data)<br> File "C:\Program Files\Chimera 1.16\bin\lib\urllib.py", line 351, in open_http<br> errcode, errmsg, headers = h.getreply()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1196, in getreply<br> response = self._conn.getresponse()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 1121, in getresponse<br> response.begin()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 438, in begin<br> version, status, reason = self._read_status()<br> File "C:\Program Files\Chimera 1.16\bin\lib\httplib.py", line 394, in _read_status<br> line = self.fp.readline(_MAXLINE + 1)<br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br>IOError: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br>IOError: [Errno socket error] [Errno 10054] An existing connection was forcibly closed by the remote host<br><br> File "C:\Program Files\Chimera 1.16\bin\lib\socket.py", line 480, in readline<br> data = self._sock.recv(self._rbufsize)<br><br>See reply log for Python traceback.<br><br><br>Traceback from web service request (connection setup):<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 11, in __init__<br> self._setup(serviceName, opalURL, sessionData)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 50, in _setup<br> self.sudsClient = Client(self.serviceURL + "?wsdl", **kw)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\client.py", line 115, in __init__<br> self.wsdl = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 150, in open<br> d = self.fn(url, self.options)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\wsdl.py", line 136, in __init__<br> d = reader.open(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 74, in open<br> d = self.download(url)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\reader.py", line 100, in download<br> return sax.parse(string=content)<br> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\suds_jurko-0.6-py2.7.egg\suds\sax\parser.py", line 133, in parse<br> sax.parse(source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 111, in parse<br> xmlreader.IncrementalParser.parse(self, source)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\xmlreader.py", line 123, in parse<br> self.feed(buffer)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\expatreader.py", line 224, in feed<br> self._err_handler.fatalError(exc)<br> File "C:\Program Files\Chimera 1.16\bin\lib\xml\sax\handler.py", line 38, in fatalError<br> raise exception<br>SAXParseException: <unknown>:76:2: mismatched tag<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Traceback from Blastp request:<br>Traceback (most recent call last):<br> File "C:\Program Files\Chimera 1.16\share\blastpdb\ParserBlastP.py", line 362, in _initBlast<br> self.opal = OpalService(self.ServiceName)<br> File "C:\Program Files\Chimera 1.16\share\WebServices\opal_client.py", line 21, in __init__<br> raise NonChimeraError("Web service appears "<br>NonChimeraError: Web service appears to be down. See Reply Log for more details.<br><br>Typically, if you get a TypeError, it's a problem on the remote server<br>and it should be fixed shortly. If you get a different error or<br>get TypeError consistently for more than a day, please report the<br>problem using the Report a Bug... entry in the Help menu. Please<br>include the traceback printed above as part of the problem description.<br>Blast web service appears to be down. See Reply Log for more details.<br></div><div><br></div><div><br></div><div><b><font size="4">I also attached the image of my input. Would you help me with this please? How can I fix these problems??</font></b></div><div><b><font size="4">My operating system is Windows 10 64X and chimera version is 1.16</font></b></div><div><b><font size="4">Regards, </font></b></div><div><br></div><div><br></div><div><br></div><div><br></div><div><img src="cid:ii_l38m6m670" alt="image.png" width="562" height="532"><br></div><div><br clear="all"><div><br></div>-- <br><div dir="ltr" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div style="font-size:small"><div style="font-size:12.8px"><font face="georgia, serif" size="2">İyi çalışmalar dilerim,<br><br></font><div style="font-size:12.8px;letter-spacing:0.2px"><div style="font-size:12.8px"><font face="georgia, serif" size="2">Doç. Dr. Fırat Kurt</font></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Bitkisel Üretim ve Teknolojileri Bölümü</span><br></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Uygulamalı Bilimler Fakültesi</span><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px"><br></span></div><div style="font-size:12.8px"><font face="georgia, serif" size="2">Muş Alparslan Üniversitesi</font></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Muş-Türkiye </span><br></div><div style="font-size:12.8px"><font face="georgia, serif" size="2">Tel :+90 436 249 10 83 Dahili: 2686<br></font><div><font face="georgia, serif" size="2">Fax :+90 436 231 22 01</font></div></div></div><div style="font-size:12.8px;letter-spacing:0.2px"><span style="font-family:georgia,serif;font-size:small">----------------------------------------------</span></div><div style="font-size:12.8px;letter-spacing:0.2px"><span style="font-family:georgia,serif;color:rgb(34,34,34);letter-spacing:0.2px">Fırat Kurt, Ph. D. </span></div><div style="font-size:12.8px;letter-spacing:0.2px"><div><div style="color:rgb(34,34,34)"><span style="color:rgb(0,0,0);font-family:georgia,serif">Associate Prof. of Plant Biotechnology</span><span style="font-family:georgia,serif"><br></span></div><div style="color:rgb(34,34,34)"><span style="font-family:georgia,serif;letter-spacing:0.2px">Department of Plant Production and Technologies</span><br></div><div style="color:rgb(34,34,34)"><span style="font-family:georgia,serif">Faculty of Applied Sciences</span></div><div style="color:rgb(34,34,34)"><font face="georgia, serif" size="2">Mus Alparslan University<br></font><div><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Mus-Turkey</span><br></div><font face="georgia, serif" size="2">Phone :+90 436 249 10 83 Ext. :2036<br></font><div><font face="georgia, serif" size="2">Fax :+90 436 231 22 01</font></div></div></div><div><a href="http://www.alparslan.edu.tr/" target="_blank"><font face="georgia, serif" size="2">www.alparslan.edu.tr</font></a></div></div><div style="font-size:12.8px;letter-spacing:0.2px"></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
</div><br clear="all"><div><br></div>-- <br><div dir="ltr" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div style="font-size:small"><div style="font-size:12.8px"><font face="georgia, serif" size="2">İyi çalışmalar dilerim,<br><br></font><div style="font-size:12.8px;letter-spacing:0.2px"><div style="font-size:12.8px"><font face="georgia, serif" size="2">Doç. Dr. Fırat Kurt</font></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Bitkisel Üretim ve Teknolojileri Bölümü</span><br></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Uygulamalı Bilimler Fakültesi</span><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px"><br></span></div><div style="font-size:12.8px"><font face="georgia, serif" size="2">Muş Alparslan Üniversitesi</font></div><div style="font-size:12.8px"><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Muş-Türkiye </span><br></div><div style="font-size:12.8px"><font face="georgia, serif" size="2">Tel :+90 436 249 10 83 Dahili: 2686<br></font><div><font face="georgia, serif" size="2">Fax :+90 436 231 22 01</font></div></div></div><div style="font-size:12.8px;letter-spacing:0.2px"><span style="font-family:georgia,serif;font-size:small">----------------------------------------------</span></div><div style="font-size:12.8px;letter-spacing:0.2px"><span style="font-family:georgia,serif;color:rgb(34,34,34);letter-spacing:0.2px">Fırat Kurt, Ph. D. </span></div><div style="font-size:12.8px;letter-spacing:0.2px"><div><div style="color:rgb(34,34,34)"><span style="color:rgb(0,0,0);font-family:georgia,serif">Associate Prof. of Plant Biotechnology</span><span style="font-family:georgia,serif"><br></span></div><div style="color:rgb(34,34,34)"><span style="font-family:georgia,serif;letter-spacing:0.2px">Department of Plant Production and Technologies</span><br></div><div style="color:rgb(34,34,34)"><span style="font-family:georgia,serif">Faculty of Applied Sciences</span></div><div style="color:rgb(34,34,34)"><font face="georgia, serif" size="2">Mus Alparslan University<br></font><div><span style="font-family:georgia,serif;font-size:small;letter-spacing:0.2px">Mus-Turkey</span><br></div><font face="georgia, serif" size="2">Phone :+90 436 249 10 83 Ext. :2036<br></font><div><font face="georgia, serif" size="2">Fax :+90 436 231 22 01</font></div></div></div><div><a href="http://www.alparslan.edu.tr/" target="_blank"><font face="georgia, serif" size="2">www.alparslan.edu.tr</font></a></div></div><div style="font-size:12.8px;letter-spacing:0.2px"></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>