<div dir="ltr">Helllo:<div><br></div><div>I used SALIGN to obtain alignment / superposition of peptides. On the SALIGN webpage there is a link for Launch Chimera.  When I click this I get a download of a file named "show.chimerax".  Then nothing happens.  The file contents appear to be directing ChimeraX to the data on the web and are as follows:</div><div><br></div><div><?xml version="1.0"?><br><ChimeraPuppet type="std_webdata"><br> <br><web_files><br>         <file  name="alignment.pir" format="text"  loc="<a href="https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/str-str_out.ali?passwd=lLzU3A8rBT">https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/str-str_out.ali?passwd=lLzU3A8rBT</a>" /><br>         <file  name="model1_fit.pdb" format="text"  loc="<a href="https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model1_fit.pdb?passwd=lLzU3A8rBT">https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model1_fit.pdb?passwd=lLzU3A8rBT</a>" /><br>         <file  name="model2_fit.pdb" format="text"  loc="<a href="https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model2_fit.pdb?passwd=lLzU3A8rBT">https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model2_fit.pdb?passwd=lLzU3A8rBT</a>" /><br>         <file  name="model3_fit.pdb" format="text"  loc="<a href="https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model3_fit.pdb?passwd=lLzU3A8rBT">https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model3_fit.pdb?passwd=lLzU3A8rBT</a>" /><br>         <file  name="model4_fit.pdb" format="text"  loc="<a href="https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model4_fit.pdb?passwd=lLzU3A8rBT">https://modbase.compbio.ucsf.edu/salign/results.cgi/job_225330/model4_fit.pdb?passwd=lLzU3A8rBT</a>" /><br></web_files><br><commands><br>        <py_cmd>chimera.processNewMolecules(chimera.openModels.list(modelTypes=[chimera.Molecule]))</py_cmd><br>        <py_cmd>import MultAlignViewer</py_cmd><br>        <py_cmd>mols = chimera.openModels.list()</py_cmd><br>        <py_cmd><br>m=chimera.extension.manager<br>for i in m.instances:<br>    if isinstance(i, MultAlignViewer.MAViewer.MAViewer):<br>        mav = i<br>        </py_cmd><br>        <py_cmd><br>for m in mols:<br>    if not m in mav.associations.keys():<br>        mav.associate([m])<br>mav.match(mols[0], mols[1:], iterate=True)</py_cmd><br></commands><br></ChimeraPuppet><br></div><div><br></div><div>What am I supposed to do with this file.  ChimeraX does not have a file extension   .ChimeraX  hence I do not know how to proceed next.  Can anyone help?  Thanks in advance.  </div><div><br></div></div>