<div dir="auto">I will try that. Thanks Elaine</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, 22 Nov, 2022, 22:07 Elaine Meng, <<a href="mailto:meng@cgl.ucsf.edu">meng@cgl.ucsf.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Prathvi,<br>
I don't know how good it would look, but there are options to adjust depth-cueing in the ChimeraX lighting command<br>
<<a href="https://rbvi.ucsf.edu/chimerax/docs/user/commands/lighting.html" rel="noreferrer noreferrer" target="_blank">https://rbvi.ucsf.edu/chimerax/docs/user/commands/lighting.html</a>><br>
<br>
...that you could embed in the "perframe" command for gradual changes<br>
<<a href="https://rbvi.ucsf.edu/chimerax/docs/user/commands/perframe.html" rel="noreferrer noreferrer" target="_blank">https://rbvi.ucsf.edu/chimerax/docs/user/commands/perframe.html</a>><br>
<br>
It would require you to do some experimentation and reading about how to use perframe.<br>
<br>
Chimera has analogous commands, where depthcue control is in the "set" command.<br>
<<a href="https://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/midas/set.html" rel="noreferrer noreferrer" target="_blank">https://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/midas/set.html</a>><br>
<<a href="https://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/midas/perframe.html" rel="noreferrer noreferrer" target="_blank">https://www.rbvi.ucsf.edu/chimera/current/docs/UsersGuide/midas/perframe.html</a>><br>
<br>
I hope this helps,<br>
Elaine<br>
-----<br>
Elaine C. Meng, Ph.D.                       <br>
UCSF Chimera(X) team<br>
Department of Pharmaceutical Chemistry<br>
University of California, San Francisco<br>
<br>
> On Nov 22, 2022, at 4:28 AM, Prathvi Singh via Chimera-users <<a href="mailto:chimera-users@cgl.ucsf.edu" target="_blank" rel="noreferrer">chimera-users@cgl.ucsf.edu</a>> wrote:<br>
> <br>
> Hi Elaine,<br>
> Is there a way to change the depth cueing gradually using command line in either chimera or chimeraX? If possible, then it would be a great way to emphasize on a specific part of the protein while making a chimera movie.<br>
<br>
</blockquote></div>