[chimerax-users] ChimeraX bug reporter gives error when http proxy set

[Tom Goddard]

Hi Gleb,

  Very funny!  I have fixed the bug reporting error.  It only happened when you have an http proxy set.  I guess no one tried reporting a bug using an http proxy before.

	Tom


> On Apr 16, 2019, at 9:40 AM, James Starlight wrote:
> 
> Elaine,
> 
> i have got a bug while trying to report a bug :-)
> 
> Failed to send bug report. Error while sending follows:
> Traceback (most recent call last):
> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/bug_reporter/bug_reporter_gui.py",
> line 231, in submit
> errcode, errmsg, headers, body = post_multipart_formdata(BUG_HOST,
> BUG_SELECTOR, fields)
> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/bug_reporter/post_form.py",
> line 36, in post_multipart_formdata
> h = HTTPConnection(realhost)
> UnboundLocalError: local variable 'HTTPConnection' referenced before assignment
> 
> вт, 16 апр. 2019 г. в 18:11, Elaine Meng <meng at cgl.ucsf.edu>:
>> 
>> Hi Gleb/James,
>> You should use the Report a Bug dialog, not this e-mail list, when you have a bug.  Both ChimeraX and Chimera have this dialog in their Help menus, and it is also a button on the error dialog in most cases.
>> Best,
>> Elaine
>> -----
>> Elaine C. Meng, Ph.D.
>> UCSF Chimera(X) team
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
>> 
>>> On Apr 16, 2019, at 1:30 AM, James Starlight <jmsstarlight at gmail.com> wrote:
>>> 
>>> Dear ChimeraX users!
>>> 
>>> I am using a cxc script together with the following options to run
>>> ChimeraX in no-gui mode.
>>> chimerax-daily --offscreen --nogui test.cxc
>>> 
>>> here is my scrript
>>> 
>>> # chimeraX script
>>> windowsize 800 600
>>> open ./test.pdb
>>> view; zoom 1.0; turn x 90; turn z -80;
>>> 
>>> preset 'overall look' publication
>>> color byattribute bfactor palette rainbow range 2,100
>>> 
>>> # make info
>>> 2dlab create title text "B-factors for" color red font gothic xpos .04
>>> ypos .90 size 30
>>> # options for light
>>> light depthcuestart .4 depthcueend .8; lighting full
>>> 
>>> save image ./test.png format png width  800 height  600 supersample 4
>>> transparentBackground  false
>>> 
>>> This script works fine with GUI producing very good picture but with
>>> the --nogui it gave me error:
>>> 
>>> Traceback (most recent call last):
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/ChimeraX_main.py",
>>> line 699, in init
>>>   commands.run(sess, 'open %s' % arg)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/run.py",
>>> line 31, in run
>>>   results = command.run(text, log=log)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
>>> line 2616, in run
>>>   result = ci.function(session, **kw_args)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/open.py",
>>> line 41, in open
>>>   from_database=from_database, ignore_cache=ignore_cache, **kw))
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/open.py",
>>> line 117, in open
>>>   models = handle_unknown_kw(session.models.open, paths,
>>> format=format, name=name, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/open.py",
>>> line 62, in handle_unknown_kw
>>>   return f(*args, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/models.py",
>>> line 601, in open
>>>   session, filenames, format=format, name=name, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/io.py",
>>> line 467, in open_multiple_data
>>>   models, status = open_data(session, fspec, format=format, name=name, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/io.py",
>>> line 421, in open_data
>>>   models, status = open_func(*args, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/scripting.py",
>>> line 115, in open_command_script
>>>   run(session, text)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/run.py",
>>> line 31, in run
>>>   results = command.run(text, log=log)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/cli.py",
>>> line 2616, in run
>>>   result = ci.function(session, **kw_args)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/commands/save.py",
>>> line 61, in save
>>>   fmt.export(session, filename, fmt.nicknames[0], **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/io.py",
>>> line 203, in export
>>>   result = self.export_func(session, path, **kw)
>>> File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/core/image.py",
>>> line 43, in save_image
>>>   raise LimitationError("Unable to render images to save them")
>>> chimerax.core.errors.LimitationError: Unable to render images to save them
>>> 
>>> could you help me how it may be fixed?
>>> 
>>> Thank you in advance!
>>> 
>>> Gleb
>> 
>> 
>> 
> 
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