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<font size="4"><font face="monospace">Hi Moritz, <br>
<br>
thank you, it does the trick. <br>
<br>
I thought that depthcuestart would start at 1.0 at the position
of centering, there was my mistake. <br>
<br>
Best<br>
Vincent<br>
</font></font><br>
<div class="moz-cite-prefix">Le 17/02/2022 à 14:38, Hunkeler, Moritz
a écrit :<br>
</div>
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<p class="MsoNormal">Hi Vincent,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">the depthCue is in relation to your
clipping planes, so you have to play with these values as
well.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><a class="moz-txt-link-freetext" href="https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/lighting.html">https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/lighting.html</a><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><i>“</i><b><i><span
style="font-size:13.5pt;font-family:Times;color:black">depthCueStart</span></i></b><i><span
style="font-size:13.5pt;font-family:Times;color:black"> start<br>
<b>depthCueEnd</b> end<br>
Set the position of the depth-cueing ramp. Depth-cueing
shading increases linearly from start to end, each
expressed as a position relative to the front (0.0) and
back (1.0) global clipping planes (<b>0.5</b> to <b>1.0</b> in <b>simple</b> lighting).
See also: </span></i><b><i><u><span
style="font-size:13.5pt;font-family:Times;color:blue">clip</span></u></i></b><i>”<o:p></o:p></i></p>
<p class="MsoNormal"><i><o:p> </o:p></i></p>
<p class="MsoNormal"><i><o:p> </o:p></i></p>
<p class="MsoNormal">By setting the clipping planes right at the
‘back’ and ‘front’ of you structure, you should get a very
strong ‘fog gradient’ around the center with something like
(if I understand your query correctly):<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">lighting depthcue true depthCueStart 0.45
depthCueEnd 0.5<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best,<o:p></o:p></p>
<p class="MsoNormal">Moritz<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span
style="font-size:12.0pt;color:black">From: </span></b><span
style="font-size:12.0pt;color:black">ChimeraX-users
<a class="moz-txt-link-rfc2396E" href="mailto:chimerax-users-bounces@cgl.ucsf.edu"><chimerax-users-bounces@cgl.ucsf.edu></a> on behalf of
vincent Chaptal via ChimeraX-users
<a class="moz-txt-link-rfc2396E" href="mailto:ChimeraX-users@cgl.ucsf.edu"><ChimeraX-users@cgl.ucsf.edu></a><br>
<b>Reply-To: </b>vincent Chaptal
<a class="moz-txt-link-rfc2396E" href="mailto:vincent.chaptal@ibcp.fr"><vincent.chaptal@ibcp.fr></a><br>
<b>Date: </b>Thursday, February 17, 2022 at 03:43<br>
<b>To: </b>ChimeraX Users Help
<a class="moz-txt-link-rfc2396E" href="mailto:ChimeraX-users@cgl.ucsf.edu"><ChimeraX-users@cgl.ucsf.edu></a><br>
<b>Subject: </b>[chimerax-users] fine tuning depthcue<o:p></o:p></span></p>
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<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<p><b><span style="color:white;background:red"> External
Email - Use Caution </span></b><o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><span
style="font-size:13.5pt;font-family:"Courier New"">Hi,
<br>
<br>
I've been playing around a lot with depthcue-ing but I can't
get it to do quite what I would like.
<br>
<br>
I want to display a protein structure, with a focus on one
zone and a "heavy" depthcue to have a strong "fog" hiding
much of the background (without deleting the residues in the
back).
<br>
<br>
my script includes:<br>
lighting full #(sometimes I use soft too)<br>
lighting shadows true intensity 0.3<br>
lighting qualityOfShadows finer<br>
lighting depthcue true depthCueStart 0.1 depthCueEnd 1.0<br>
<br>
<br>
First, I have selected one residue and setting the rotation
around it by using "cofr sel"<br>
<br>
My max depthcue is with "depthCueStart 0.1 depthCueEnd 1.0".
I've tried to change these numbers in many different ways,
including negative or very large numbers) but I can't get it
to be thicker.
<br>
<br>
Could you help me please. I missed the meaning of these
values, so I'm blind on their use.
<br>
Thank you<br>
Vincent</span><o:p></o:p></p>
<div>
<p class="MsoNormal">-- <br>
<br>
<o:p></o:p></p>
<p class="p1"><span class="s1">Vincent Chaptal, PhD</span><o:p></o:p></p>
<p class="p1"><span class="s1">Director of GdR APPICOM</span><o:p></o:p></p>
<p class="p1"><span class="s1">Drug Resistance and Membrane
Proteins Lab</span><o:p></o:p></p>
<p class="p2"><o:p> </o:p></p>
<p class="p1"><span class="s1">MMSB -UMR5086</span><o:p></o:p></p>
<p class="p1"><span class="s1">7 passage du Vercors</span><span
class="apple-converted-space"> </span><o:p></o:p></p>
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<p class="p1"><span class="s1">FRANCE</span><o:p></o:p></p>
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<p class="p1"><o:p> </o:p></p>
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<p class="p1"><span class="s1">Vincent Chaptal, PhD</span></p>
<p class="p1"><span class="s1">Director of GdR APPICOM</span></p>
<p class="p1"><span class="s1">Drug Resistance and Membrane
Proteins Lab</span></p>
<p class="p2"><span class="s1"></span><br>
</p>
<p class="p1"><span class="s1">MMSB -UMR5086</span></p>
<p class="p1"><span class="s1">7 passage du Vercors<span
class="Apple-converted-space"> </span></span></p>
<p class="p1"><span class="s1">69007 LYON</span></p>
<p class="p1"><span class="s1">FRANCE</span></p>
<p class="p1"><span class="s1">+33 4 37 65 29 01</span></p>
<p class="p1"><span class="s1"><a class="moz-txt-link-freetext" href="http://www.appicom.cnrs.fr">http://www.appicom.cnrs.fr</a></span></p>
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<p class="p1"><span class="s1"><br>
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