<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Hi Bixia,</div><div class=""><br class=""></div>You will need to download the read_castp.py file from that web page. Then if it is your downloads directory you would use<div class=""><br class=""></div><div class=""> open ~/Downloads/read_castp.py</div><div class=""><br class=""></div><div class="">In other words you have to tell it exactly where the file is unless it is in the directory where you downloaded the file. Also you can use the ChimeraX "cd" command to change to a new current directory in ChimeraX.</div><div class=""><br class=""></div><div class=""> Best to email this question to the ChimeraX mailing list instead of the Chimera mailing list.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Apr 21, 2022, at 4:42 PM, Zhang, Bixia via Chimera-users <<a href="mailto:chimera-users@cgl.ucsf.edu" class="">chimera-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta charset="UTF-8" class=""><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">Good afternoon,</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">I am trying to open .poc file from CASTP server in Chimera X. And I found this chimeraX recipe<a href="https://rbvi.github.io/chimerax-recipes/castp/castp.html" id="LPlnkOWALinkPreview" class="">https://rbvi.github.io/chimerax-recipes/castp/castp.html</a>. However, when I used the command<span class="Apple-converted-space"> </span><a href="help:user/commands/open.html" style="font-family: "DejaVu Serif"; font-size: 12px; font-weight: 700; orphans: 2; widows: 2; background-color: rgb(221, 221, 221);" class="">open</a><span style="font-family: "DejaVu Serif"; font-size: 12px; font-weight: 700; orphans: 2; widows: 2; background-color: rgb(221, 221, 221); display: inline !important;" class=""><span class=""> </span>read_castp.py</span>, it said<b style="color: rgb(220, 20, 60); font-family: "DejaVu Serif"; font-size: 12px; orphans: 2; widows: 2;" class="">No such file/path: read_castp.py</b>. I am working on a Linux unbuntu box and I don't know if this is making any difference. Could you please help with this issue?<span class="Apple-converted-space"> </span><br class=""></div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">Thank you so much!</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">Best,<div class="">Bixia</div><br class=""></div><div class="_EReadonly_1 _EType_OWALinkPreview _Entity _EId_OWALinkPreview" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div id="LPBorder_GTaHR0cHM6Ly9yYnZpLmdpdGh1Yi5pby9jaGltZXJheC1yZWNpcGVzL2Nhc3RwL2Nhc3RwLmh0bWw." class="LPBorder644142" style="width: 800px; margin-top: 16px; margin-bottom: 16px; position: relative; max-width: 800px; min-width: 424px;"><table id="LPContainer644142" role="presentation" style="padding: 12px 36px 12px 12px; width: 750px; border: 1px solid rgb(200, 200, 200); border-radius: 2px;" class=""><tbody class=""><tr valign="top" style="border-spacing: 0px;" class=""><td style="width: 744px;" class=""><div id="LPTitle644142" style="font-size: 21px; font-weight: 300; margin-right: 8px; font-family: wf_segoe-ui_light, "Segoe UI Light", "Segoe WP Light", "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; margin-bottom: 12px;" class=""><a target="_blank" id="LPUrlAnchor644142" href="https://rbvi.github.io/chimerax-recipes/castp/castp.html" style="text-decoration: none; color: var(--themePrimary);" class="">Read CASTP pockets file - ChimeraX Recipes</a></div><div id="LPDescription644142" style="font-size: 14px; max-height: 100px; color: rgb(102, 102, 102); font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; margin-bottom: 12px; margin-right: 8px; overflow: hidden;" class="">We for the ChimeraX atom specifier from chain identifier, residue number and atom name. For example, the above lines are for atoms /A:45@NH2, /B:27@O, /B:27@CG1 in ChimeraX syntax belonging to pockets 2, 1 and 1.</div><div id="LPMetadata644142" style="font-size: 14px; font-weight: 400; color: rgb(166, 166, 166); font-family: wf_segoe-ui_normal, "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif;" class=""><a href="http://rbvi.github.io/" class="">rbvi.github.io</a></div></td></tr></tbody></table></div></div><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">_______________________________________________</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">Chimera-users mailing list:<span class="Apple-converted-space"> </span></span><a href="mailto:Chimera-users@cgl.ucsf.edu" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">Chimera-users@cgl.ucsf.edu</a><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">Manage subscription:<span class="Apple-converted-space"> </span></span><a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users</a></div></blockquote></div><br class=""></div></body></html>