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<p class="MsoNormal">Hi all,</p>
<p class="MsoNormal">I hope you are doing well.</p>
<p class="MsoNormal">I have a python script that allows the user to visualize specific residue pairs.
</p>
<p class="MsoNormal">Here is an overview of how the script functions:</p>
<ul style="margin-top:0in" type="disc">
<li class="MsoListParagraph" style="margin-left:0in;mso-list:l1 level1 lfo3">Ask the user to input the path of a .cxs file (created previously) and a text file containing the pairs to be visualized</li><li class="MsoListParagraph" style="margin-left:0in;mso-list:l1 level1 lfo3">Print the names of the pairs along a uniquely assigned number</li><li class="MsoListParagraph" style="margin-left:0in;mso-list:l1 level1 lfo3">Ask the user to input a number in order to visualize the pair assigned to it</li></ul>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">To run the script currently, I have to do the following: i)Open chimerax ii)Show the shell iii) Call the script from the shell</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Now, is it possible to include some codes in the script that would allow me to just open chimerax, click on File -> Open -> this script, and then the shell would show up and the execution would continue there?</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Right now, if I ran the script using File -> Open -> this script, I would get this error:</p>
<p class="MsoNormal">Traceback (most recent call last):<br>
File "C:/Users/Shubham/Desktop/this_script.py", line 8, in <br>
session_path = input('Enter file (.cxs) to be visualized with path: \n')<br>
RuntimeError: input(): lost sys.stdin </p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Regards,</p>
<p class="MsoNormal">Shubham</p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Sent from <a href="https://go.microsoft.com/fwlink/?LinkId=550986">
Mail</a> for Windows</p>
<p class="MsoNormal"><o:p> </o:p></p>
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