<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Moritz,<div class=""><br class=""></div><div class=""> I made ChimeraX go back to rotating about a common center point after tiled models are all closed to avoid having subsequently opened models get out of alignment when rotating. This will be in tomorrow's ChimeraX nightly builds.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Aug 5, 2022, at 12:19 PM, Tom Goddard via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html; charset=utf-8" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Moritz,<div class=""><br class=""></div><div class=""> I see, using the tile command sets the rotation mouse mode to rotate each displayed model about its own center. And when you close those models to open new data it stays in that mode which is confusing. I agree that closing the original models you tiled should change the rotation mouse mode back to rotating about a common center point. I've made a bug report to fix that. <a href="https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7405" class="">https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7405</a><br class=""><div class=""><br class=""></div><div class=""> I've also made a feature request for the reset command. <a href="https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7406" class="">https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7406</a></div><div class=""><br class=""></div><div class=""> Thanks for suggesting these improvements!</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><br class=""><blockquote type="cite" class=""><div class="">On Aug 5, 2022, at 11:58 AM, Hunkeler, Moritz via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta charset="UTF-8" class=""><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Hi,<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">not sure whether I understand the description correctly, but I had a similar ‘problem’ and then realized that it was because of the new tile function. I used tile, then closed the session, then opened new maps and they were all ‘misaligned’ as described (the misalignment comes from the fact that while in tile mode only the shown maps turn, and not the hidden maps). So, if you used tile, then you’ll need to specify ‘tile off’ even when starting a new session.<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Btw I would really appreciate if there was a ‘reset’ command that would set everything back to the start/default settings (clipping / lighting / background / silhouette / tile / etc).<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Best,<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Moritz<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(181, 196, 223); padding: 3pt 0in 0in;" class=""><p class="MsoNormal" style="margin: 0in 0in 12pt; font-size: 11pt; font-family: Calibri, sans-serif;"><b class=""><span style="font-size: 12pt;" class="">From:<span class="Apple-converted-space"> </span></span></b><span style="font-size: 12pt;" class="">ChimeraX-users <<a href="mailto:chimerax-users-bounces@cgl.ucsf.edu" class="">chimerax-users-bounces@cgl.ucsf.edu</a>> on behalf of Moritz, Michelle via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>><br class=""><b class="">Date:<span class="Apple-converted-space"> </span></b>Thursday, August 4, 2022 at 14:54<br class=""><b class="">To:<span class="Apple-converted-space"> </span></b><a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a><span class="Apple-converted-space"> </span><<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>><br class=""><b class="">Subject:<span class="Apple-converted-space"> </span></b>[chimerax-users] maps not on same grid in new ChimeraX?<o:p class=""></o:p></span></p></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 1pt; color: white;" class="">Hello, I recently updated my ChimeraX to version1.</span><span style="font-size: 1pt; font-family: "Segoe UI Symbol", sans-serif; color: white;" class=""></span><span style="font-size: 1pt; color: white;" class="">4(2022-06-03).</span><span style="font-size: 1pt; font-family: "Segoe UI Symbol", sans-serif; color: white;" class=""></span><span style="font-size: 1pt; color: white;" class=""><span class="Apple-converted-space"> </span>It seems that now when I open cryoEM maps they are not always opening on the same grid, although they have the same box and pixel size.</span><span style="font-size: 1pt; font-family: "Segoe UI Symbol", sans-serif; color: white;" class=""></span><span style="font-size: 1pt; color: white;" class=""><span class="Apple-converted-space"> </span>As I recall, in previous versions of Chimera,<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 1pt; color: white;" class="">ZjQcmQRYFpfptBannerStart<o:p class=""></o:p></span></div></div><table class="MsoNormalTable" border="0" cellspacing="0" cellpadding="0" width="100%" style="width: 858px; border-radius: 4px;"><tbody class=""><tr class=""><td style="padding: 12pt 0in;" class=""><table class="MsoNormalTable" border="1" cellspacing="0" cellpadding="0" width="100%" style="width: 858px; background-color: rgb(208, 216, 220); border-style: solid none none; border-top-width: 3pt; border-top-color: rgb(144, 164, 174);"><tbody class=""><tr class=""><td valign="top" style="border: none; padding: 0in 7.5pt 3.75pt 4.5pt;" class=""><table class="MsoNormalTable" border="0" cellspacing="0" cellpadding="0" align="left"><tbody class=""><tr class=""><td style="padding: 3pt 6pt;" class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="font-size: 10.5pt; font-family: Arial, sans-serif;" class="">This Message Is From an External Sender<o:p class=""></o:p></span></b></div></td></tr><tr class=""><td style="padding: 3pt 6pt;" class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 9pt; font-family: Arial, sans-serif;" class="">This message came from outside your organization.<o:p class=""></o:p></span></div></td></tr></tbody></table></td></tr></tbody></table></td></tr></tbody></table><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="font-size: 1pt; color: white;" class="">ZjQcmQRYFpfptBannerEnd<o:p class=""></o:p></span></div></div><p class=""><b class=""><span style="color: white; background-color: red;" class=""> External Email - Use Caution </span></b><o:p class=""></o:p></p><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Hello,<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">I recently updated my ChimeraX to version1.4(2022-06-03). It seems that now when I open cryoEM maps they are not always opening on the same grid, although they have the same box and pixel size. As I recall, in previous versions of Chimera, maps with the same box and pixel size would open in a coordinated, overlapping fashion, and they would move together when manipulated. Is there a preference that I need to set in the latest version in order for this to happen?<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Thanks for your help,<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Michelle<o:p class=""></o:p></div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; caret-color: rgb(0, 0, 0); font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at<span class="Apple-converted-space"> </span><a href="https://www.massgeneralbrigham.org/complianceline" class="">https://www.massgeneralbrigham.org/complianceline</a><span class="Apple-converted-space"> </span>.</div><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif; caret-color: rgb(0, 0, 0); font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">Please note that this e-mail is not secure (encrypted). 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