<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Ran,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>There is no need to send the same question to the mailing list three times within minutes of one another.</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>It looks like the bonds are between the wrong pairs of atoms. Assuming your trajectory is model #1, these commands should fix it: "~bond; bond #1".</div><div class=""><br class=""></div><div class=""><div class="">--Eric</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>UCSF Computer Graphics Lab</div></div><div class=""><br class=""></div><div class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Sep 8, 2022, at 6:03 PM, 洪冉 via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div style="line-height: 1.7; font-size: 14px; font-family: Arial;" class=""><div style="line-height: 1.7; font-size: 14px; font-family: Arial;" class=""><div class="">Dear ChimeraX developers and users,</div><div class="">I tried to use ChimeraX to visualize my MD trajectory and I found some bonds were stretched very long and weird, see below</div><div class="">In VMD, I could fix this phenomenon using updatebond features, could anybody tell me how to enable this feature in ChimeraX? Many thanks in advance.</div><div class=""><span id="cid:1505998205.234777.1662685429948.Hmail.hongran@ahpu.edu.cn"><image.png></span></div><br class=""><br class=""><div class="">Ran hong</div><div class=""><a href="mailto:hongran@ahpu.edu.cn" _src="mailto:hongran@ahpu.edu.cn" class="">hongran@ahpu.edu.cn</a> </div><div class="">Anhui polytechnic university</div><div class="">Wuhu, China, 241000</div><div style="position:relative;zoom:1" class=""><div style="clear:both" class=""></div></div></div><br class=""><br class=""><br class=""><br class=""><br class=""><br class=""><div id="dvLetterAngle" class=""></div><div style="position:relative;zoom:1" class=""></div></div><br class="">_______________________________________________<br class="">ChimeraX-users mailing list<br class=""><a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="">ChimeraX-users@cgl.ucsf.edu</a><br class="">Manage subscription:<br class="">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users<br class=""></div></blockquote></div><br class=""></div></body></html>