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Hi Tom and Elaine, Thanks a lot for your quick response. Yes the supersample option when saving an image solves my problem (for manuscript preparation)! Best, Zhen From: Tom Goddard <goddard@ sonic. net>
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Hi Tom and Elaine,</div>
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<br>
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Thanks a lot for your quick response.</div>
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Yes the supersample option when saving an image solves my problem (for manuscript preparation)!</div>
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Best,</div>
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Zhen</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Tom Goddard <goddard@sonic.net><br>
<b>Sent:</b> Wednesday, September 14, 2022 9:34 AM<br>
<b>To:</b> Chen, Zhen <Zhen.Chen@ucsf.edu><br>
<b>Cc:</b> chimerax-users@cgl.ucsf.edu <chimerax-users@cgl.ucsf.edu><br>
<b>Subject:</b> Re: [chimerax-users] Multi-sampling in ChimeraX</font>
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Hi Zhen, There is currently no multisampling option in ChimeraX. As Elaine mentions you can use the supersample option when saving an image (e. g. "save mymol. png super 3"). To get sharper appearance of graphics and user interface on the screen
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</style>Hi Zhen,
<div class=""><br class="">
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<div class="">There is currently no multisampling option in ChimeraX. As Elaine mentions you can use the supersample option when saving an image (e.g. "save mymol.png super 3"). To get sharper appearance of graphics and user interface on the screen a nice
approach is to use a 4K display.
<div class=""><br class="">
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<div class="">When looking at maps use "step 1" in the Volume Viewer panel to show full resolution. If it is "step 2" (when you open a large map it may start at step 2) it will use only every other grid point along each axis and the surface will be more jagged.</div>
<div class=""><br class="">
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<div class="">And if you want to make your map appear smoother in the graphics you can resample it on a finer grid. For example EMDB 12654 has a grid spacing of 1.5 Angstroms. To resample it at 0.8 Angstroms.</div>
<div class=""><br class="">
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<div class=""><span class="x_Apple-tab-span" style="white-space:pre"></span>open 12654 from emdb</div>
<div class=""><span class="x_Apple-tab-span" style="white-space:pre"></span>volume resample #1 spacing 0.8</div>
<div class=""><br class="">
</div>
<div class="">The appearance is then somewhat smoother as shown in the attached images.</div>
<div class=""><br class="">
</div>
<div class=""><span class="x_Apple-tab-span" style="white-space:pre"></span>Tom</div>
<div class=""><br class="">
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<div class="">EMDB 12654 at original 1.5A grid spacing.<br class="">
<div><img id="x_79410864-8881-47AB-BE79-D0F719C49B41" width="512" height="446" class="" data-outlook-trace="F:1|T:1" src="cid:C239FF81-040B-41CC-B197-20E23E99E8D1"></div>
<div><br class="">
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<div>EMDB 12654 resampled at finer 0.8A grid spacing.</div>
<div><img id="x_A99448D2-44AC-4997-983E-5A1988AB894C" width="512" height="446" class="" data-outlook-trace="F:1|T:1" src="cid:9B9A9E26-4502-4971-8ACA-7D8015254680"><br class="">
<blockquote type="cite" class="">
<div class="">On Sep 13, 2022, at 11:13 PM, Chen, Zhen via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div>
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Hi all,</div>
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<br class="">
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May I ask is there <span class="" style="color:rgb(29,28,29); font-family:Slack-Lato,Slack-Fractions,appleLogo,sans-serif; font-size:15px; font-variant-ligatures:common-ligatures; text-align:left; background-color:rgb(255,255,255); display:inline!important">a
super-sampling option in ChimeraX to turn on so that the edges of maps are smoother?</span></div>
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<span class="" style="color:rgb(29,28,29); font-family:Slack-Lato,Slack-Fractions,appleLogo,sans-serif; font-size:15px; font-variant-ligatures:common-ligatures; text-align:left; background-color:rgb(255,255,255); display:inline!important"><br class="">
</span></div>
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<font color="#1d1c1d" face="Slack-Lato, Slack-Fractions, appleLogo, sans-serif" class=""><span class="" style="font-size:15px; font-variant-ligatures:common-ligatures">Somethiing equivalent to Tools - Viewing Controls - Effects, there is a Graphics quality,
you can choose subdivision and whether to turn on multisample.</span></font></div>
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<font color="#1d1c1d" face="Slack-Lato, Slack-Fractions, appleLogo, sans-serif" class=""><span class="" style="font-size:15px; font-variant-ligatures:common-ligatures">Thanks!</span></font></div>
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<span class="" style="color:rgb(29,28,29); font-family:Slack-Lato,Slack-Fractions,appleLogo,sans-serif; font-size:15px; font-variant-ligatures:common-ligatures; text-align:left; background-color:rgb(255,255,255); display:inline!important"><br class="">
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<span class="" style="color:rgb(29,28,29); font-family:Slack-Lato,Slack-Fractions,appleLogo,sans-serif; font-size:15px; font-variant-ligatures:common-ligatures; text-align:left; background-color:rgb(255,255,255); display:inline!important">Best,</span></div>
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<span class="" style="color:rgb(29,28,29); font-family:Slack-Lato,Slack-Fractions,appleLogo,sans-serif; font-size:15px; font-variant-ligatures:common-ligatures; text-align:left; background-color:rgb(255,255,255); display:inline!important">Zhen</span></div>
<span class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important">_______________________________________________</span><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<span class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important">ChimeraX-users
mailing list</span><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<a href="mailto:ChimeraX-users@cgl.ucsf.edu" class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">ChimeraX-users@cgl.ucsf.edu</a><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<span class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important">Manage
subscription:</span><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a></div>
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