<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Hi Mary,</div><div class=""><br class=""></div>The resfit command only works on amino acid sequences. You can look at the density around specific residues using the Zone mouse mode in the "Right Mouse" toolbar. You click on residues with right mouse button (or Command-click on Mac) and it shows just the residues and density nearby and labels the residues. Here's an example<div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>open 7tzt</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>open 7tzt from eds</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>ui mousemode right zone</div><div class=""> # Command-click on and atom of residue 89</div><div class=""><br class=""></div><div class="">Clicking on an atom and dragging up or down makes the zone shown around that residue larger or smaller.</div><div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div class=""><br class=""></div><div class=""><img apple-inline="yes" id="8895E42C-5DE3-4E5C-B4FE-0DD817A5B387" width="577" height="477" src="cid:822EDA04-4937-45BC-9006-37C303910A7E" class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Sep 22, 2022, at 7:54 PM, Mary Liu via ChimeraX-users <<a href="mailto:chimerax-users@cgl.ucsf.edu" class="">chimerax-users@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Dear Chimera X users, <div class=""><br class=""><div class="">Is it possible to show the fit of each nucleotide (not amino acid residue) in density using the resfit command or something like that?</div></div><div class=""><br class=""></div><div class="">Thanks</div></div>
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