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<div class="elementToProof"><span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="elementToProof">Dear sir or madam,</span></div>
<div class="elementToProof"><span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);">I am new to docking analysis.
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<div class="elementToProof"><span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);">I obtained a model from SwissDock but there are some commands that do not work on ChimeraX.<br>
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<li><span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);">I can load the molecule, which is composed by 4 homo-chains. I can select one chain (A); how can I delete or hide chains
B-D. I can select chain A using <code>select>chain</code>`; is there a way to hide the others?</span></li><li class="elementToProof" style="font-size: 14pt; font-family: Verdana, Geneva, sans-serif; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);">
<span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="ContentPasted0">The model (saved in the file clusters.dock4.pdb) shows several ligands:</span>
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<span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="ContentPasted0"><img style="max-width: 100%;" class="w-611 h-504" size="171552" contenttype="image/png" data-outlook-trace="F:1|T:1" src="cid:c289e47f-ca49-4f27-9ad6-acef069f976e"><img style="max-width: initial; width: 727px; height: 504px;" class="w-727 h-615" id="imageSelected0" width="727" height="504" data-outlook-trace="F:1|T:1" src="cid:728d8f47-8cfb-445c-9476-ebb8a9d54ef9"></span></div>
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<span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="ContentPasted0">Is there a way to show only the ligands with the highest docking score?</span></div>
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<span style="font-family: Verdana, Geneva, sans-serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="ContentPasted0 ContentPasted1 ContentPasted2">3. the
<code>tools>binding analysis>ViewDockX</code>` says that "No suitable models found for ViewDockX". But is not this the "<span style="font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="ContentPasted0 ContentPasted3">clusters.dock4.pdb</span>"?
How can I load the model into ChimeraX?</span></div>
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Thank you.<br>
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<span style="font-size: 14pt;">Best regards,</span></div>
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<div style="font-family: Verdana, Geneva, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="font-size: 14pt;"><b>Luigi Marongiu</b></span></div>
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<span style="font-size: 14pt;">Ph.D., B.Sc. (Hons.)</span></div>
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