<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body style="overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">Hi André,<div><br></div><div> In ChimeraX if you selected the atoms of your structure then use the Python shell from menu Tools / General / Shell and type in this bit of Python code</div><div><br></div><div><div>from chimerax.atomic import selected_atoms</div><div>for a in selected_atoms(session):</div><div> a.coord = 1.5 * a.coord</div></div><div><br></div><div>it will scale all atom positions by a factor of 1.5. This code could be turned into a simple ChimeraX command if you needed to use it many times. Here are examples of simple Python code to define ChimeraX commands.</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span><a href="https://rbvi.github.io/chimerax-recipes/">https://rbvi.github.io/chimerax-recipes/</a></div><div><br></div><div> I am not sure why the old Chimera script does not work in Chimera 1.16. We have not developed the old Chimera software for about 6 years so I forget the details of how atom coordinates are retrieved.</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Tom</div><div><br><div><br><blockquote type="cite"><div>On Jan 19, 2023, at 3:13 AM, André Graça via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:</div><br class="Apple-interchange-newline"><div><meta charset="UTF-8"><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><o:p> </o:p></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">Hi everyone,<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">I hope to at least get a reply from Tom, but this may need a bit of troubleshooting (?).<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">I looked into a very old post of yours, Tom, about rescaling an atomic model (see it at the end of my email).<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">I put everything in place but I get an error and I wonder if anything has changed with the PDB format since 2005, or some incompatibility with new chimera versions…<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">If there is actually a way of doing the same with ChimeraX, that would be incredible =)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">Cheers!<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">André<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">Error and forwarded message comes now:<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">__________________________________________________<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">AttributeError Exception in Tk callback<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> Function: <bound method MidasUI.processCommand of <Midas.midas_ui.MidasUI instance at 0x00000000079092C8>> (type: <type 'instancemethod'>)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> Module: <module 'Midas.midas_ui' from 'C:\Program Files\Chimera 1.16\share\Midas\midas_ui.pyc'> (line: 618)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> Args: (<Tkinter.Event instance at 0x00000000198D8AC8>,)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> Event type: KeyPress (type num: 2)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">Traceback (innermost last):<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> File "C:\Program Files\Chimera 1.16\bin\lib\site-packages\Pmw\Pmw_1_3_3\lib\PmwBase.py", line 1747, in __call__<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> return apply(self.func, args)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> File "C:\Program Files\Chimera 1.16\share\Midas\midas_ui.py", line 628, in processCommand<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> midas_text.makeCommand(cmdText)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> File "C:\Program Files\Chimera 1.16\share\Midas\midas_text.py", line 69, in makeCommand<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> f(c, args)<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> File "C:\Program Files\Chimera 1.16\share\scalemol\ChimeraExtension.py", line 23, in scale_molecule<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> x, y, z = a.coord().xyz.data()<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">AttributeError: '_chimera.Point' object has no attribute 'xyz'<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">================================================<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> Event contents:<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> char:<span class="Apple-converted-space"> </span><o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> delta: 0<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> height: ??<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> keycode: 13<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> keysym: Return<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> keysym_num: 65293<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> num: ??<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> serial: 14638<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> state: 8<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> time: 154527203<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> type: 2<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> widget: .121252488L.126915336L.428746824L.428747592L.428747720L<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> width: ??<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> x: 228<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> x_root: 288<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> y: -22<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"> y_root: 941<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US">______________________________________________________________________<o:p></o:p></span></div><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">------- Start of forwarded message -------<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Date: Wed, 27 Apr 2005 11:05:55 -0700 (PDT)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">From: Thomas Goddard <</span><span style=""><a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" style="color: rgb(5, 99, 193); text-decoration: underline;"><span lang="EN-US">goddard at cgl.ucsf.edu</span></a></span><span lang="EN-US" style="">><o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Hi Jinghua,<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> By "virus cage pdb file" I guess you mean you placed atoms at<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">icosahedral positions, and want to show them connected up to show some<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">icosahedral pattern.<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> I think the easiest approach is to open your old session, run a<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">command to change the diameter of the cage, then save a new session.<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Below is some Python code that provides a "scalemol" Chimera command.<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Make a directory chimera/share/scalemol in your Chimera distribution<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">and put the code below in file chimera/share/scalemol/ChimeraExtension.py.<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Then start Chimera, open the cage PDB model, use menu entry<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Favorites/Command line, and type a command:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> scalemol 0 1.5<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">to make model number 0 bigger by a factor of 1.5. If you have more than<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">one model open you can see the model numbers using Favorites / Model Panel,<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">the model number is shown in the left hand column.<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> Tom<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">- ----<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">scalemol/ChimeraExtension.py code follows:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""># -----------------------------------------------------------------------------<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">#<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">def scale_molecule(cmdname, args):<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> from Midas.midas_text import error<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> fields = args.split()<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> try:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> model_num = int(fields[0])<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> factor = float(fields[1])<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> except:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> error('Syntax error: scalemol <model-number> <factor>')<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> return<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> import chimera<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> mlist = chimera.openModels.list(id = model_num)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> if len(mlist) == 0:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> error('scalemol: No model number %d' % model_num)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> return<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> for model in mlist:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> for a in model.atoms:<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> x, y, z = a.coord().xyz.data()<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> c = chimera.Coord()<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> c.x, c.y, c.z = (factor*x, factor*y, factor*z)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> a.setCoord(c)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""> <o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""># -----------------------------------------------------------------------------<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">#<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">import Midas.midas_text<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">Midas.midas_text.addCommand('scalemol', scale_molecule)<o:p></o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style=""><o:p> </o:p></span></pre><pre style="margin: 0cm 0cm 0.0001pt; font-size: 10pt; font-family: "Courier New";"><span lang="EN-US" style="">------- End of forwarded message -------<o:p></o:p></span></pre><div style="margin: 0cm; font-size: 11pt; font-family: Calibri, sans-serif;"><span lang="EN-US"><o:p> </o:p></span></div></div><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">_______________________________________________</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">ChimeraX-users mailing list</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><a href="mailto:ChimeraX-users@cgl.ucsf.edu" style="color: rgb(5, 99, 193); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">ChimeraX-users@cgl.ucsf.edu</a><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Manage subscription:</span><br style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><a href="https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users" style="color: rgb(5, 99, 193); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users</a></div></blockquote></div><br></div></body></html>