<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Amith,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>You can install packages into ChimeraX with its “pip” command, <i class="">e.g.</i> “pip install pandas”.</div><div class=""><br class=""></div><div class="">—Eric<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith <<a href="mailto:Amith.Rangarajan@ucsf.edu" class="">Amith.Rangarajan@ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" lang="en" id="pfptBannerk61g3u8" style="color: revert !important; color-scheme: revert !important; font-family: revert !important; font-feature-settings: revert !important; font-kerning: revert !important; font-optical-sizing: revert !important; font-palette: revert !important; 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animation: revert !important; appearance: revert !important; aspect-ratio: revert !important; backface-visibility: revert !important; background-attachment: revert !important; background-blend-mode: revert !important; background-clip: revert !important; background-image: revert !important; background-origin: revert !important; background-size: revert !important; base-palette: revert !important; baseline-shift: revert !important; border-collapse: revert !important; border-image-outset: revert !important; border-image-repeat: revert !important; border-image-slice: revert !important; border-image-source: revert !important; border-image-width: revert !important; box-shadow: revert !important; box-sizing: revert !important; break-after: revert !important; break-before: revert !important; break-inside: revert !important; buffered-rendering: revert !important; caption-side: revert !important; caret-color: revert !important; clear: revert !important; clip: revert !important; clip-path: revert !important; clip-rule: revert !important; color-interpolation: revert !important; color-interpolation-filters: revert !important; column-count: revert !important; column-fill: revert !important; column-gap: revert !important; column-rule-color: revert !important; column-rule-style: revert !important; column-rule-width: revert !important; column-span: revert !important; column-width: revert !important; contain: revert !important; content: revert !important; counter-increment: revert !important; counter-reset: revert !important; cursor: revert !important; cx: revert !important; cy: revert !important; dominant-baseline: revert !important; empty-cells: revert !important; fallback: revert !important; fill: revert !important; fill-opacity: revert !important; fill-rule: revert !important; filter: revert !important; flex: revert !important; flex-flow: revert !important; float: revert !important; flood-color: revert !important; flood-opacity: revert !important; font-display: revert !important; glyph-orientation-horizontal: revert !important; glyph-orientation-vertical: revert !important; grid-auto-columns: revert !important; grid-auto-flow: revert !important; grid-auto-rows: revert !important; grid-column-end: revert !important; grid-column-start: revert !important; grid-row-end: revert !important; grid-row-start: revert !important; grid-template-areas: revert !important; grid-template-columns: revert !important; grid-template-rows: revert !important; hanging-punctuation: revert !important; image-orientation: revert !important; image-rendering: revert !important; input-security: revert !important; isolation: revert !important; justify-content: revert !important; justify-items: revert !important; justify-self: revert !important; kerning: revert !important; lighting-color: revert !important; line-break: revert !important; line-height: revert !important; list-style: revert !important; marker-end: revert !important; marker-mid: revert !important; marker-start: revert !important; mask: revert !important; mask-composite: revert !important; mask-mode: revert !important; mask-size: revert !important; mask-type: revert !important; math-style: revert !important; mix-blend-mode: revert !important; negative: revert !important; object-fit: revert !important; object-position: revert !important; offset-anchor: revert !important; offset-distance: revert !important; offset-path: revert !important; offset-position: revert !important; offset-rotate: revert !important; order: revert !important; orphans: revert !important; outline: revert !important; outline-offset: revert !important; overflow-wrap: revert !important; overflow: revert !important; override-colors: revert !important; overscroll-behavior: revert !important; pad: revert !important; page: revert !important; paint-order: revert !important; perspective: revert !important; perspective-origin: revert !important; pointer-events: revert !important; position: revert !important; prefix: revert !important; print-color-adjust: revert !important; quotes: revert !important; r: revert !important; range: revert !important; resize: revert !important; rotate: revert !important; row-gap: revert !important; rx: revert !important; ry: revert !important; scale: revert !important; scroll-behavior: revert !important; scroll-snap-align: revert !important; scroll-snap-stop: revert !important; scroll-snap-type: revert !important; shape-image-threshold: revert !important; shape-margin: revert !important; shape-outside: revert !important; shape-rendering: revert !important; size: revert !important; speak-as: revert !important; src: revert !important; stop-color: revert !important; stop-opacity: revert !important; stroke: revert !important; stroke-color: revert !important; stroke-dasharray: revert !important; stroke-dashoffset: revert !important; stroke-linecap: revert !important; stroke-linejoin: revert !important; stroke-miterlimit: revert !important; stroke-opacity: revert !important; stroke-width: revert !important; suffix: revert !important; symbols: revert !important; system: revert !important; tab-size: revert !important; table-layout: revert !important; text-align: left !important; text-anchor: revert !important; text-combine-upright: revert !important; text-decoration: revert !important; text-decoration-color: revert !important; text-decoration-line: revert !important; text-decoration-skip-ink: revert !important; text-decoration-style: revert !important; text-decoration-thickness: revert !important; text-emphasis-color: revert !important; text-emphasis-position: revert !important; text-emphasis-style: revert !important; text-indent: revert !important; text-overflow: revert !important; text-shadow: revert !important; text-transform: revert !important; text-underline-offset: revert !important; text-underline-position: revert !important; touch-action: revert !important; transform: revert !important; transform-box: revert !important; transform-origin: revert !important; transform-style: revert !important; transition: revert !important; translate: revert !important; unicode-range: revert !important; vector-effect: revert !important; vertical-align: revert !important; white-space: revert !important; widows: revert !important; will-change: revert !important; word-break: revert !important; word-spacing: revert !important; word-wrap: revert !important; x: revert !important; y: revert !important; z-index: revert !important; -apple-color-filter: revert !important; -apple-pay-button-style: revert !important; -apple-pay-button-type: revert !important; -apple-trailing-word: revert !important; -internal-text-autosizing-status: revert !important; -webkit-backdrop-filter: revert !important; -webkit-background-clip: revert !important; -webkit-background-origin: revert !important; -webkit-background-size: revert !important; border-spacing: revert !important; -webkit-border-image: revert !important; -webkit-box-align: revert !important; -webkit-box-decoration-break: revert !important; -webkit-box-direction: revert !important; -webkit-box-flex: revert !important; -webkit-box-flex-group: revert !important; -webkit-box-lines: revert !important; -webkit-box-ordinal-group: revert !important; -webkit-box-orient: revert !important; -webkit-box-pack: revert !important; -webkit-box-reflect: revert !important; -webkit-box-shadow: revert !important; -webkit-column-axis: revert !important; -webkit-column-progression: revert !important; -webkit-cursor-visibility: revert !important; -webkit-font-size-delta: revert !important; -webkit-hyphenate-character: revert !important; -webkit-hyphenate-limit-after: revert !important; -webkit-hyphenate-limit-before: revert !important; -webkit-hyphenate-limit-lines: revert !important; -webkit-hyphens: revert !important; -webkit-initial-letter: revert !important; -webkit-line-align: revert !important; -webkit-line-box-contain: revert !important; -webkit-line-clamp: revert !important; -webkit-line-grid: revert !important; -webkit-line-snap: revert !important; -webkit-marquee-direction: revert !important; -webkit-marquee-increment: revert !important; -webkit-marquee-repetition: revert !important; -webkit-marquee-speed: revert !important; -webkit-marquee-style: revert !important; -webkit-mask-box-image: revert !important; -webkit-mask-box-image-outset: revert !important; -webkit-mask-box-image-repeat: revert !important; -webkit-mask-box-image-slice: revert !important; -webkit-mask-box-image-source: revert !important; -webkit-mask-box-image-width: revert !important; -webkit-mask: revert !important; -webkit-mask-composite: revert !important; -webkit-mask-source-type: revert !important; -webkit-nbsp-mode: revert !important; -webkit-rtl-ordering: revert !important; -webkit-ruby-position: revert !important; -webkit-text-combine: revert !important; -webkit-text-decorations-in-effect: revert !important; -webkit-text-fill-color: revert !important; -webkit-text-security: revert !important; -webkit-text-stroke-color: revert !important; -webkit-text-stroke-width: revert !important; -webkit-transform-style: revert !important; -webkit-user-drag: revert !important; -webkit-user-modify: revert !important; -webkit-user-select: revert !important; display: block !important; visibility: revert !important; opacity: revert !important; background-color: rgb(208, 216, 220) !important; block-size: revert !important; border-block: revert !important; border-color: rgb(144, 164, 174) revert revert !important; border-style: solid revert revert !important; border-width: 4px revert revert !important; border-end-end-radius: revert !important; border-end-start-radius: revert !important; border-inline: revert !important; border-radius: 4px !important; border-start-end-radius: revert !important; border-start-start-radius: revert !important; inset: revert !important; height: revert !important; inline-size: revert !important; inset-block: revert !important; inset-inline: revert !important; margin-block: revert !important; margin-inline: revert !important; max-block-size: revert !important; max-height: revert !important; max-inline-size: revert !important; max-width: revert !important; min-block-size: revert !important; min-height: revert !important; min-inline-size: revert !important; padding-block: revert !important; padding-inline: revert !important; scroll-margin-block: revert !important; scroll-margin: revert !important; scroll-margin-inline: revert !important; scroll-padding-block: revert !important; scroll-padding: revert !important; scroll-padding-inline: revert !important; width: revert !important; margin: 16px 0px !important; padding: 8px 16px !important; min-width: 200px !important; background-position: revert !important; background-repeat: revert !important;" class=""><div id="pfptBannerk61g3u8" style="color: unset !important; color-scheme: unset !important; font-family: unset !important; font-feature-settings: unset !important; font-kerning: unset !important; font-optical-sizing: unset !important; font-palette: unset !important; font-size: unset !important; font-stretch: unset !important; font-style: unset !important; font-synthesis: unset !important; font-variant-alternates: unset !important; 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-webkit-mask-box-image: unset !important; -webkit-mask-box-image-outset: unset !important; -webkit-mask-box-image-repeat: unset !important; -webkit-mask-box-image-slice: unset !important; -webkit-mask-box-image-source: unset !important; -webkit-mask-box-image-width: unset !important; mask-size: unset !important; -webkit-mask: unset !important; -webkit-mask-composite: unset !important; -webkit-mask-source-type: unset !important; -webkit-nbsp-mode: unset !important; -webkit-rtl-ordering: unset !important; -webkit-ruby-position: unset !important; -webkit-text-combine: unset !important; -webkit-text-decorations-in-effect: unset !important; -webkit-text-fill-color: unset !important; -webkit-text-security: unset !important; -webkit-text-stroke-color: unset !important; -webkit-text-stroke-width: unset !important; -webkit-transform-style: unset !important; -webkit-user-drag: unset !important; -webkit-user-modify: unset !important; -webkit-user-select: unset !important; display: block !important; visibility: visible !important; opacity: unset !important; background-color: rgb(208, 216, 220) !important; block-size: unset !important; border-block: unset !important; border: unset !important; border-radius: unset !important; border-end-end-radius: unset !important; border-end-start-radius: unset !important; border-inline: unset !important; border-start-end-radius: unset !important; border-start-start-radius: unset !important; inset: unset !important; height: unset !important; inline-size: unset !important; inset-block: unset !important; inset-inline: unset !important; margin-block: unset !important; margin: unset !important; margin-inline: unset !important; max-block-size: unset !important; max-height: unset !important; max-inline-size: unset !important; max-width: unset !important; min-block-size: unset !important; min-height: unset !important; min-inline-size: unset !important; min-width: unset !important; padding-block: unset !important; padding: unset !important; padding-inline: unset !important; scroll-margin-block: unset !important; scroll-margin: unset !important; scroll-margin-inline: unset !important; scroll-padding-block: unset !important; scroll-padding: unset !important; scroll-padding-inline: unset !important; width: unset !important; background-position: unset !important; background-repeat: unset !important;" class="">This Message Is From an External Sender</div><div id="pfptBannerk61g3u8" style="color-scheme: unset !important; font-family: Arial, sans-serif !important; font-feature-settings: unset !important; font-kerning: unset !important; font-optical-sizing: unset !important; font-palette: unset !important; font-size: 12px !important; font-stretch: unset !important; font-style: unset !important; font-synthesis: unset !important; font-variant-alternates: unset !important; font-variant-caps: unset !important; font-variant-east-asian: unset !important; font-variant-ligatures: unset !important; font-variant-numeric: unset !important; font-variant-position: unset !important; 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-webkit-cursor-visibility: unset !important; -webkit-hyphenate-character: unset !important; -webkit-hyphenate-limit-after: unset !important; -webkit-hyphenate-limit-before: unset !important; -webkit-hyphenate-limit-lines: unset !important; -webkit-hyphens: unset !important; -webkit-initial-letter: unset !important; -webkit-line-align: unset !important; -webkit-line-box-contain: unset !important; -webkit-line-clamp: unset !important; -webkit-line-grid: unset !important; -webkit-line-snap: unset !important; -webkit-mask-box-image: unset !important; -webkit-mask-box-image-outset: unset !important; -webkit-mask-box-image-repeat: unset !important; -webkit-mask-box-image-slice: unset !important; -webkit-mask-box-image-source: unset !important; -webkit-mask-box-image-width: unset !important; mask-size: unset !important; -webkit-mask: unset !important; -webkit-mask-composite: unset !important; -webkit-mask-source-type: unset !important; -webkit-nbsp-mode: unset !important; -webkit-rtl-ordering: unset !important; -webkit-ruby-position: unset !important; -webkit-text-combine: unset !important; -webkit-text-decorations-in-effect: unset !important; -webkit-text-fill-color: unset !important; -webkit-text-security: unset !important; -webkit-text-stroke-color: unset !important; -webkit-text-stroke-width: unset !important; -webkit-transform-style: unset !important; -webkit-user-drag: unset !important; -webkit-user-modify: unset !important; -webkit-user-select: unset !important; display: block !important; visibility: visible !important; opacity: unset !important; background-color: rgb(208, 216, 220) !important; block-size: unset !important; border-block: unset !important; border: unset !important; border-radius: unset !important; border-end-end-radius: unset !important; border-end-start-radius: unset !important; border-inline: unset !important; border-start-end-radius: unset !important; border-start-start-radius: unset !important; inset: unset !important; height: unset !important; inline-size: unset !important; inset-block: unset !important; inset-inline: unset !important; margin-block: unset !important; margin-inline: unset !important; max-block-size: unset !important; max-height: unset !important; max-inline-size: unset !important; max-width: unset !important; min-block-size: unset !important; min-height: unset !important; min-inline-size: unset !important; min-width: unset !important; padding-block: unset !important; padding: unset !important; padding-inline: unset !important; scroll-margin-block: unset !important; scroll-margin: unset !important; scroll-margin-inline: unset !important; scroll-padding-block: unset !important; scroll-padding: unset !important; scroll-padding-inline: unset !important; width: unset !important; background-position: unset !important; background-repeat: unset !important;" class="">This message came from outside your organization.</div></div><div style="height: 0px; clear: both !important; display: block !important; visibility: hidden !important; line-height: 0 !important; font-size: 0.01px !important;" class=""></div></div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);">Dear Eric,</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);"><br class=""></div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);">thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.<br class=""><br class="">i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.<br class=""><br class="">i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.<br class=""><br class="">is there a way to include scikit learn , pandas libraries in chimerax script?</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);"><br class=""></div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);">thanks once again for all your support !</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);"><br class=""></div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);">best</div><div class="elementToProof" style="font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; background-color: rgb(255, 255, 255);">amith</div></div></blockquote></div><br class=""></div></body></html>