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<div class=""><p class="">Hi Tom,</p><p class="">To the best of my understanding, ChimeraX displays images and
associated segmentations in physical space not image space.
However, segmentations are performed in image space. EMDB-SFF uses
the first transform in the transforms_list field (with id=0) as
the image-to-physical transform.
(<a class="moz-txt-link-freetext" href="https://emdb-empiar.github.io/EMDB-SFF/v0.8.0.dev1/segmentation_da_xsd.html#segmentation_transform_list">https://emdb-empiar.github.io/EMDB-SFF/v0.8.0.dev1/segmentation_da_xsd.html#segmentation_transform_list</a>)</p><p class="">I've tested with two files having the same segmentation but
different values for transform 0 and they render the same.</p><p class="">Could you please implement this feature in ChimeraX?</p><p class="">Kind regards,<br class="">
</p>
<div class="moz-signature">-- <br class=""><p style="font-size: 10pt" class="">
<strong class="">Paul K. Korir, PhD</strong><br class="">
<em class="">3D Visualisation Lead</em><br class="">
<span style="color: grey" class="">CS3DB</span><br class="">
<span style="color: grey" class=""><strong class="">EMBL-EBI</strong></span><br class="">
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