<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-8-i">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: "Times New Roman", Times, serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="elementToProof">
Hi,</div>
<div style="font-family: "Times New Roman", Times, serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="elementToProof">
<br>
</div>
<div style="font-family: "Times New Roman", Times, serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="elementToProof">
I checked the commands-user guide but couldn't find answers:</div>
<div style="font-family: "Times New Roman", Times, serif; font-size: 14pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class="elementToProof">
<div class="elementToProof">
<ol>
<li class="elementToProof">To write out a selection of atoms to a PDB, do I need to name the selection first?</li><li class="elementToProof">I couldn't find the clipping tool (after setting a pivot I see only small part of the model).</li><li class="elementToProof">The min/max values of a potential from APBS (.dx) seem to be different in Chimerax than they are in Chimera. I'm working on a tetramer and while in Chimera the whole tetramer surface is covered by the potential, in Chimerax it' shown
for each monomer. Is that the source of the difference?</li><li class="elementToProof">What's the Chimerax equivalent of ~longbonds of Chimera?</li><li class="elementToProof">Just wondering, is there a demo for electrostatic potential surface around a ligand? I seem to be making progress on that but a demo would be most helpful.</li></ol>
<div class="elementToProof">Thanks,</div>
<div class="elementToProof"><br>
</div>
<div class="elementToProof"> Boaz</div>
</div>
</div>
<div class="elementToProof">
<div id="Signature">
<div>
<div id="divtagdefaultwrapper" dir="ltr" style="font-size: 10pt; font-family: "Times New Roman", Times, serif; color: rgb(0, 0, 255);">
<div style="font-family:Tahoma; font-size:13px">
<div><font face="Times New Roman" size="3"></font> </div>
<div><font face="Times New Roman" size="3"></font> </div>
<div><font color="#000080" face="Times New Roman" size="3" style=""><em>Boaz Shaanan, Ph.D.
<br>
Dept. of Life Sciences <br>
Ben-Gurion University of the Negev <br>
Beer-Sheva 84105 <br>
Israel <br>
<br>
E-mail: bshaanan@bgu.ac.il<br>
Phone: 972-8-647-2220 <br>
Fax: 972-8-647-2992 or 972-8-646-1710 </em></font></div>
<div><font color="#000080" face="Times New Roman" size="3" style=""><em></em></font> </div>
<div><font color="#000080" face="Times New Roman" size="3" style=""><em></em></font> </div>
<div><font face="Times New Roman" size="3"><em><font color="#000080" style="">
<br>
<br>
</font></em></font></div>
<font face="Times New Roman" size="3"></font></div>
</div>
</div>
</div>
</div>
</body>
</html>