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Imported modules
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import chimera
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Functions
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activate_midas_emulator
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activate_midas_emulator ()
Turn on Midas emulator and turn off accelerators
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active_marker_set
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active_marker_set ()
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backbone_only
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backbone_only ()
Display backbone only
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ball_and_stick_representation
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ball_and_stick_representation ()
Show molecules with ball and stick representation
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clear_selection
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clear_selection ()
Clear selection
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close_all_models
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close_all_models ()
Close all models
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color_by_element
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color_by_element ()
Color atoms by element
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display_atoms
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display_atoms ()
Display atoms
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edged_ribbon
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edged_ribbon ()
Show molecules with edged ribbon representation
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flat_ribbon
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flat_ribbon ()
Show molecules with flat ribbon representation
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hide_all_markers
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hide_all_markers ()
Hide all volume markers from the active marker set
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hide_atoms
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hide_atoms ()
Hide atoms
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hide_midas_emulator
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hide_midas_emulator ()
Undisplay the Midas emulator
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hide_ribbon
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hide_ribbon ()
Hide molecule ribbons by undisplaying residues
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hide_volume
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hide_volume ()
Hide active volume viewer volume
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quit
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quit ()
Quit Chimera
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register_accelerators
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register_accelerators ()
Standard accelerators.
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remove_volume
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remove_volume ()
Remove active volume viewer volume
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round_ribbon
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round_ribbon ()
Show molecules with round ribbon representation
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show_accelerator_dialog
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show_accelerator_dialog ()
Show accelerator browser dialog
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show_all_markers
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show_all_markers ()
Show all volume markers from the active marker set
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show_blue_markers
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show_blue_markers ()
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show_chain_trace_only
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show_chain_trace_only ()
Show molecule chain trace only
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show_cyan_markers
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show_cyan_markers ()
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show_green_markers
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show_green_markers ()
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show_model_panel
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show_model_panel ()
Show the model panel dialog
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show_mouse_modes
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show_mouse_modes ()
Show mouse modes pane of preferences dialog
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show_open_file_dialog
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show_open_file_dialog ()
Show the main Chimera open file dialog
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show_open_volume_dialog
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show_open_volume_dialog ()
Show the volume viewer open file dialog
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show_phantom_dialog
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show_phantom_dialog ()
Show Phantom force feedback dialog for placing markers on volume data
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show_preferences_dialog
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show_preferences_dialog ()
Show Preferences dialog
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show_python_shell
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show_python_shell ()
Show Python shell (IDLE)
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show_red_markers
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show_red_markers ()
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show_reply_log
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show_reply_log ()
Show Reply log
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show_side_chains_only
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show_side_chains_only ()
Show molecule side chains/bases only
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show_side_view
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show_side_view ()
Show side view dialog
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show_users_guide
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show_users_guide ()
Show users guide in web browser
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show_volume
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show_volume ()
Show active volume viewer volume
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show_volume_dialog
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show_volume_dialog ()
Show volume viewer dialog
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show_volume_markers
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show_volume_markers ( rgb )
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show_volume_path_tracer_dialog
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show_volume_path_tracer_dialog ()
Show volume path tracer viewer dialog
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sphere_representation
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sphere_representation ()
Show molecules with sphere representation
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standard_orientation
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standard_orientation ()
Rotate active models to standard orientation.
x horizontal, y vertical, z out of screen
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stick_representation
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stick_representation ()
Show molecules with stick representation
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toggle_blue_markers
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toggle_blue_markers ()
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toggle_cyan_markers
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toggle_cyan_markers ()
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toggle_green_markers
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toggle_green_markers ()
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toggle_red_markers
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toggle_red_markers ()
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toggle_status_line
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toggle_status_line ()
Show or unshow main window status line
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toggle_volume_markers
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toggle_volume_markers ( rgb )
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turn_off_accelerators
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turn_off_accelerators ()
Turn off accelerators
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view_all
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view_all ()
Adjust camera center and scale so all displayed models are in view.
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wire_representation
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wire_representation ()
Show molecules with wire representation
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