|
reads a ClustalW ALN format file
|
Imported modules
|
|
from MultAlignViewer.parse import WrongFileTypeError, FormatSyntaxError
from chimera.Sequence import Sequence
import string
|
|
Functions
|
|
parse
|
|
|
parse
|
parse ( fileName )
|
Exceptions
|
|
FormatSyntaxError( "Line %d is not " "sequence name followed by sequence " " contents and optional ungapped length" % lineNum )
FormatSyntaxError( "Sequence on line %d not in" " initial sequence block" % lineNum )
WrongFileTypeError()
|
|
|