Module: structAssoc

MultAlignViewer/structAssoc.py

Imported modules

from NeedlemanWunsch import nw
from chimera.Sequence import Sequence

Functions

dragMatch

dragMatch (
        aseq,
        gappedMseq,
        maxErrors,
        )

mseq longer than aseq can still be gaps in mseq

Exceptions
Exceptions	ValueError, "bad assoc"

makeForcedMatch

makeForcedMatch (
        side,
        aseq,
        mseq,
        aseqStart,
        aseqLength,
        mseqStart,
        mseqLength,
        )

nwAssoc

nwAssoc ( alignSeq,  molSeq )

tryAssoc

tryAssoc (
        alignSeq,
        molSeq,
        gappedMseq,
        maxErrors=6,
        )

Exceptions
Exceptions	ValueError, "bad assoc"

Classes

When done, self.best will either be None or a 3-tuple.

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