HappyDoc Generated Documentation ./IMOD/imod.py

. / IMOD / imod.py 

Functions   
  create_mesh 
create_mesh (
        c,
        pixel_size,
        xyz_scale,
        rgba,
        surf_model,
        name,
        )
  read_imod_chunks 
read_imod_chunks ( file )
  read_imod_segmentation 
read_imod_segmentation (
        path,
        mesh=True,
        contours=True,
        )

Read segmentation data from IMOD 1.2 files.

  read_chunk 
read_chunk ( file,  chunk_format )
  mesh_geometry 
mesh_geometry ( c )
  read_imod 
read_imod ( path )
Exceptions   

TypeError, 'File %s is not in IMOD binary file format. First 4 bytes are not "IMOD"' % path

  print_table 
print_table ( t )
  terminate_string_at_null_character 
terminate_string_at_null_character ( s )
  create_contour 
create_contour (
        c,
        pixel_size,
        xyz_scale,
        radius,
        rgba,
        link,
        mset,
        )
  imod_models 
imod_models (
        chunk_list,
        name,
        mesh,
        contours,
        )
  stitched_contours_surface_model 
stitched_contours_surface_model ( chunk_list )

This does not work well. It is non-trivial to stitch contours of forked and nested volumes.

Classes   

This document was automatically generated Thu Nov 15 14:09:13 2007 by HappyDoc version 3.0.a1