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/ . / MultAlignViewer / parsePhylo.py / PhyloNode
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Methods
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assignXdeltas
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assignXdeltas ( self )
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assignSeqIndices
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assignSeqIndices (
self,
seqs,
assignments=None,
)
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Exceptions
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UserError( "Tree node '%s' matches multiple" " sequences" % self.label )
UserError( "No sequence name matches tree node" " name '%s'" % self.label )
UserError("Sequence '%s' matches multiple tree" " nodes: '%s' and '%s'" %( seqs [ assignment ].name, self.label, assignments [ assignment ].label ) )
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assignXpositions
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assignXpositions (
self,
branchStyle="even",
curX=0.0,
maxLength=None,
)
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Exceptions
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ValueError( "Unknown/unimplemented branch style: " + branchStyle )
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assignYpositions
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assignYpositions ( self )
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countNodes
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countNodes ( self, nodeType=None )
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maxLength
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maxLength ( self )
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assignedIndices
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assignedIndices ( self )
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freshCopy
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freshCopy ( self )
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__init__
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__init__ ( self )
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