readALN.py

reads a ClustalW ALN format file

readFASTA.py

reads an aligned FASTA file

readMSF.py

MSF reads a Multiple Sequence Format (MSF) file.

readPIR.py

reads a PIR file

readPfam.py

reads a Pfam file

readRSF.py

reads a GCG9 RSF format file

readStockholm.py

reads a Stockholm (Pfaat, HMMer, Pfam) format file