Help on class Atom in module _molecule:

class Atom(_chimera.Selectable)
 |  Not instantiable from Python
 |  
 |  Method resolution order:
 |      Atom
 |      _chimera.Selectable
 |      libwrappy2.WrapPy
 |      __builtin__.object
 |  
 |  Methods defined here:
 |  
 |  __hash__(...)
 |      x.__hash__() <==> hash(x)
 |  
 |  __str__ = _labelFunc(item)
 |  
 |  addBond(...)
 |      addBond(element: Bond)
 |  
 |  addPseudoBond(...)
 |      addPseudoBond(element: PseudoBond)
 |  
 |  allLocations(...)
 |      allLocations() -> list of Atom
 |  
 |  allRings(...)
 |      allRings(crossResidues: bool = false, sizeThreshold: int = 0) -> list of Ring
 |  
 |  associated(...)
 |      associated(otherAtom: Atom, category: unicode) -> bool
 |  
 |  associations(...)
 |      associations(category: unicode, otherAtom: (Atom|None) = None) -> list of PseudoBond
 |  
 |  clearVdwPoints(...)
 |      clearVdwPoints()
 |  
 |  connectsTo(...)
 |      connectsTo(a: Atom) -> Bond
 |  
 |  coord(...)
 |      coord() -> chimera.Point
 |      coord(cs: CoordSet) -> chimera.Point
 |  
 |  coordination(...)
 |      coordination(valueIfUnknown: int = 0) -> int
 |  
 |  currentLabelOffset(...)
 |      currentLabelOffset() -> chimera.Vector
 |  
 |  findBond(...)
 |      findBond(a: Atom) -> Bond
 |  
 |  findPseudoBond(...)
 |      findPseudoBond(i: int) -> PseudoBond
 |  
 |  haveBfactor(...)
 |      haveBfactor() -> bool
 |  
 |  haveOccupancy(...)
 |      haveOccupancy() -> bool
 |  
 |  labelCoord(...)
 |      labelCoord() -> chimera.Point
 |  
 |  minimumRings(...)
 |      minimumRings(crossResidues: bool = false) -> list of Ring
 |  
 |  primaryBonds(...)
 |      primaryBonds() -> list of Bond
 |  
 |  primaryNeighbors(...)
 |      primaryNeighbors() -> list of Atom
 |  
 |  removeBond(...)
 |      removeBond(element: Bond)
 |  
 |  removePseudoBond(...)
 |      removePseudoBond(element: PseudoBond)
 |  
 |  revertDefaultRadius(...)
 |      revertDefaultRadius()
 |  
 |  rootAtom(...)
 |      rootAtom(ignoreBreakPoints: bool) -> Atom
 |  
 |  setCoord(...)
 |      setCoord(c: chimera.Point)
 |      setCoord(c: chimera.Point, cs: CoordSet)
 |  
 |  shown(...)
 |      shown() -> bool
 |  
 |  shownColor(...)
 |      shownColor() -> chimera.Color
 |  
 |  traverseFrom(...)
 |      traverseFrom(ignoreBreakPoints: bool) -> Atom
 |  
 |  vdwPoints(...)
 |      vdwPoints() -> list of tuple(chimera.Point, chimera.Vector)
 |  
 |  xformCoord(...)
 |      xformCoord() -> chimera.Point
 |      xformCoord(cs: CoordSet) -> chimera.Point
 |  
 |  ----------------------------------------------------------------------
 |  Static methods defined here:
 |  
 |  getIdatmInfoMap(...)
 |      getIdatmInfoMap() -> dict of (unicode, Atom.IdatmInfo)
 |  
 |  ----------------------------------------------------------------------
 |  Data descriptors defined here:
 |  
 |  __dict__
 |  
 |  altLoc
 |      str
 |  
 |  anisoU
 |      object
 |  
 |  bfactor
 |      float
 |  
 |  bonds
 |      list of Bond
 |  
 |  bondsMap
 |      dict of (Atom, Bond)
 |  
 |  color
 |      chimera.Color
 |  
 |  coordIndex
 |      unsigned int
 |  
 |  defaultRadius
 |      float
 |  
 |  display
 |      bool
 |  
 |  drawMode
 |      int
 |  
 |  element
 |      Element
 |  
 |  hide
 |      bool
 |  
 |  idatmIsExplicit
 |      bool
 |  
 |  idatmType
 |      unicode
 |  
 |  label
 |      unicode
 |  
 |  labelColor
 |      chimera.Color
 |  
 |  labelOffset
 |      returns 3-tuple (or None if not set)
 |      accepts 3-tuple, Vector, or None
 |  
 |  minimumLabelRadius
 |      float
 |  
 |  molecule
 |      Molecule
 |  
 |  name
 |      unicode
 |  
 |  neighbors
 |      list of Atom
 |  
 |  numBonds
 |      unsigned int
 |  
 |  occupancy
 |      float
 |  
 |  pseudoBonds
 |      list of PseudoBond
 |  
 |  radius
 |      float
 |  
 |  residue
 |      Residue
 |  
 |  serialNumber
 |      int
 |  
 |  surfaceCategory
 |      unicode
 |  
 |  surfaceColor
 |      chimera.Color
 |  
 |  surfaceDisplay
 |      bool
 |  
 |  surfaceOpacity
 |      float
 |  
 |  vdw
 |      bool
 |  
 |  vdwColor
 |      chimera.Color
 |  
 |  ----------------------------------------------------------------------
 |  Data and other attributes defined here:
 |  
 |  Ball = 3
 |  
 |  Dot = 0
 |  
 |  EndCap = 2
 |  
 |  IdatmInfo = 
 |      IdatmInfo() -> IdatmInfo
 |      IdatmInfo(_x: Atom.IdatmInfo) -> IdatmInfo
 |  
 |  Ion = 0
 |  
 |  Linear = 2
 |  
 |  Planar = 3
 |  
 |  Single = 1
 |  
 |  Sphere = 1
 |  
 |  Tetrahedral = 4
 |  
 |  UNASSIGNED = 4294967295
 |  
 |  __new__ = 
 |      T.__new__(S, ...) -> a new object with type S, a subtype of T
 |  
 |  selLevel = 3
 |  
 |  ----------------------------------------------------------------------
 |  Methods inherited from _chimera.Selectable:
 |  
 |  oslChildren(...)
 |      oslChildren() -> list of Selectable
 |  
 |  oslIdent(...)
 |      oslIdent(start: int = SelDefault, end: int = SelDefault) -> unicode
 |  
 |  oslLevel(...)
 |      oslLevel() -> int
 |  
 |  oslParents(...)
 |      oslParents() -> list of Selectable
 |  
 |  oslTestAbbr(...)
 |      oslTestAbbr(a: OSLAbbreviation) -> bool
 |  
 |  ----------------------------------------------------------------------
 |  Static methods inherited from _chimera.Selectable:
 |  
 |  count(...)
 |      count() -> int
 |  
 |  ----------------------------------------------------------------------
 |  Data descriptors inherited from libwrappy2.WrapPy:
 |  
 |  __destroyed__
 |      true if underlying C++ object has disappeared