[chimera-dev] Chimera-dev Digest, Vol 66, Issue 12

[Jean Didier Pie Marechal]

Dear Tom and All,

During the last months, I have been improving in chimera's world by using helps and flying through the scripts as you told me to do last year (and obviously by sending you tons of queries). 
I am now getting with a small group of students with whom we are developping some scripts from different level of complexity. I think that for some of them it is easier to understand the whole architecture through the programmer's reference. Thanks a lot for trying to get it back on the web.

All the best, 

JD

Dr. Jean-Didier Maréchal
Lecturer
Computational Biotechnological Chemistry @ Transmet
Unitat de Química Física
Departament de Química
Universitat Autònoma de Barcelona
Edifici C.n.
08193 Cerdanyola (Barcelona)
Tel: +34.935814936
e-mail: JeanDidier.Marechal at uab.es

----- Missatge original -----
De: chimera-dev-request at cgl.ucsf.edu
Data: Divendres, Juliol 31, 2009 9:00 pm
Assumpte: Chimera-dev Digest, Vol 66, Issue 12

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> Today's Topics:
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>   1. Re: Programmer's reference (Thomas Goddard)
> 
> 
> --------------------------------------------------------------------
> --
> 
> Message: 1
> Date: Thu, 30 Jul 2009 17:21:40 -0700
> From: Thomas Goddard <goddard at cgl.ucsf.edu>
> Subject: Re: [chimera-dev] Programmer's reference
> To: chimera-dev at cgl.ucsf.edu
> Message-ID: <4A723914.9030202 at cgl.ucsf.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> Hi JD,
> 
>   We decided at or Chimera developer meeting today that we would 
> revive 
> the programmer's reference on the web.  It will still be auto-
> generated 
> from code comments, probably from a newer version of HappyDoc.  
> Eric 
> Pettersen will look into it.  It may be many months away since we 
> have 
> lots of higher priority projects.
> 
> 	Tom
> 
> 
> -------- Original Message --------
> Subject: Re: [chimera-dev] Programmer's reference
> From: Thomas Goddard
> To: chimera-dev at cgl.ucsf.edu
> Date: 7/27/09 4:58 PM
> 
> > Hi JD,
> > 
> >    The automatically generated programmer's reference was removed 
> from 
> > the Chimera distribution because it was large and rarely useful.  
> When 
> > it was taken out of the distribution we did not set up a daily 
> automated 
> > build for a web site reference guide.  I believe that used to 
> come from 
> > the automatic Chimera distribution builds.  We'll discuss whether 
> we 
> > should bring this back at this Thursday's developer meeting.
> > 
> >    For development here we use dir() and help() in the IDLE shell 
> as 
> > described previously
> >    http://www.cgl.ucsf.edu/pipermail/chimera-users/2008-
> February/002354.html> 
> > Also we look directly at Python code files which are included 
> with all 
> > Chimera distributions under the chimera/share directory 
> > (Chimera.app/Contents/Resources/share on Mac) and we look at the 
> C++ 
> > header files which are included in distributions under 
> chimera/include. 
> >   Of course we work all the time on Chimera code so these methods 
> may 
> > not be ideal for your less frequent programming needs.
> > 
> >    While we ponder this, you can use the Chimera 1.3 programmer's 
> > reference included with the distribution in
> > 
> > 	share/chimera/helpdir/ProgrammersGuide
> > 
> >    Tom
> > 
> > 
> > -------- Original Message --------
> > Subject: Re: [chimera-dev] Programmer's reference
> > From: Thomas Goddard
> > To: chimera-dev at cgl.ucsf.edu
> > Date: 7/27/09 1:34 PM
> > 
> >> Hi Tom and All,
> >>
> >> thanks for the answer. I knew the pdf was removed, but not the 
> full 
> >> reference.
> >> Though it was complicated sometime to get to the right place, I 
> finally 
> >> got used to it and it was useful to me.
> >>
> >> Do you think of posting another kind of reference in the future 
> or will 
> >> you stop to provide any?
> >>
> >> all the best,
> >> JD
> >>
> >> -------- Original Message --------
> >> Subject: Re: [chimera-dev] Programmer's refere 
> <goddard at cgl.ucsf.edu>>> To: Jean Didier Marechal
> >> Date: 7/24/09 10:10 PM
> >>
> >>> Hi JD,
> >>>
> >>>   I believe we no longer provide the programmer's reference 
> guide.  It 
> >>> was automatically generated from source code comments using 
> HappyDoc.  
> >>> It's quality was so poor we stopped generating it.
> >>>
> >>>     Tom
> >>>
> >>> -------- Original Message --------
> >>> Subject: [chimera-dev] Programmer's reference
> >>> From: Jean Didier Pie Marechal
> >>> To: chimera-dev at cgl.ucsf.edu
> >>> Date: 7/24/09 2:34 AM
> >>>> Dear All,
> >>>>
> >>>> It seems that we have a problem in getting to the programmer's 
> reference. Is there something wrong with the server? 
> >>>>
> >>>> All the best,
> >>>> JD
> >>>>
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> End of Chimera-dev Digest, Vol 66, Issue 12
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