[chimera-dev] Biopython paths

Darren Weber dweber at cgl.ucsf.edu
Thu May 19 11:29:02 PDT 2011


Hi Mateusz,

I've noted some tips on development with Chimera at:

http://plato.cgl.ucsf.edu/trac/chimera/wiki/ChimeraDevEnv

These tips are not recommended for casual users.  Of those docs, this 
one may be most helpful:

http://plato.cgl.ucsf.edu/trac/chimera/wiki/ChimeraDevEnv

I've had success with installation of Biopython in this way.  Attached 
is a shell script that I use regularly to install extra packages (for 
linux and OSX; you must customize some of the initial path settings).

Take care,
Darren




On 05/12/2011 10:48 AM, Mateusz Dobrych?op wrote:
> Hi,
>
> I've got another problem, that also revolves around "paths". In my 
> extension I use BioPython libraries. Unfortunately, in every file I 
> have to determine the path to my Python installation 
> (sys.path.append("C:\Python27\Lib\site-packages"), because otherwise, 
> Chimera isn't able to import Biopython.
>
> Is there any way to fix that?
>
> Mateusz
>
>
> _______________________________________________
> Chimera-dev mailing list
> Chimera-dev at cgl.ucsf.edu
> http://www.rbvi.ucsf.edu/mailman/listinfo/chimera-dev
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-dev/attachments/20110519/031c06a5/attachment.html>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: chimera_install_setup.bash
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-dev/attachments/20110519/031c06a5/attachment.ksh>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: chimera_install_setupOSX.bash
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-dev/attachments/20110519/031c06a5/attachment-0001.ksh>


More information about the Chimera-dev mailing list