[chimera-dev] Iterating through chains

Ryan Doherty rdoherty at uhnresearch.ca
Mon May 28 09:57:27 PDT 2012


Hello,

I'm trying to create a chimera script and am stumped.  I'm trying to iterate through a series of PDB entries that contain a specific protein-protein interaction (some are NMR ensembles) to create a list of residues that within specific distances of the binding interface.

I am able to successfully iterate through pdb files and residues, but am having difficulty iterating through chains of NMR ensembles.  Is there a variable like m.chains or is the number of chains accessible through chimera.openModels.list?  Also, do you have any example scripts that could help me?

Sincerely,

Ryan Doherty





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