[chimera-dev] adjust contour to mass

[Shawn Waldon]

Hi Martin,

I am not aware that there is a python library reference.  If there is, I
would appreciate a pointer to it as well.  Here are a few links I have
found helpful when writing python code for Chimera:

This shows how to execute command line commands, it may be what you want:
http://www.cgl.ucsf.edu/chimera/data/downloads/1.8/docs/ProgrammersGuide/basicPrimer.html

This goes through how to make plugins and such, but is helpful since the
examples show more of the API:
http://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/Examples/index.html

HTH,
Shawn Waldon


On Mon, Nov 18, 2013 at 9:10 AM, Martin Turk <turk at lmb.uni-muenchen.de>wrote:

> Hi,
>
> I am trying to write a simple python script that will iterate over opened
> volumes and adjust the contour level to a certain mass. This shouldn't be
> more than ~10 lines. However, I can't find chimera's python library
> reference to look up the class structure and operator names.
>
> Does someone know how, for example, set volume level to 0.01 would look
> like in python?
> in the command line it would be for all models: volume #0-99 level 0.01
>
> for models I've found chimera.openModels and then you can list over them,
> but that's about it.
>
> Thanks,
> Martin Turk
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>



-- 
Shawn Waldon
Graduate Research Assistant
Department of Computer Science
University of North Carolina at Chapel Hill
swaldon at cs.unc.edu
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