[chimera-dev] Save density map as a mesh

Tom Goddard goddard at sonic.net
Mon Jul 30 09:37:02 PDT 2018


Hi Amichai,

  Chimera computes density map isosurfaces using the marching cubes algorithm.  It can be saved in various file formats for example OBJ, others are described with the export command

	https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/export.html <https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/export.html>

  Tom


> On Jul 29, 2018, at 3:06 AM, ⁨עמיחי הולצר⁩ <⁨amiholz at gmail.com⁩> wrote:
> 
> Hi Chimera support,
> 
> I have 2 questions:
> 
> 1. How does Chimera calculate the mesh from the density map?
> 
> 2. How can I save the mesh as a file?
> 
> Thanks a lot,
> Amichai Holzer
> Huji
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> Chimera-dev at cgl.ucsf.edu
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