[chimera-dev] Auto set threshold boundaries and colors

Benjamin Looker bgl44 at cornell.edu
Sun Sep 23 10:18:29 PDT 2018


Hello!

My name is Benjamin Looker, and I have recently become acquainted with your
software for visualization of molecular orbital calculations that my group
does with some regularity. I was wondering whether the statement on this
page refers to a specific preferences file in the Chimera program files.  :

(
http://www.rbvi.ucsf.edu/chimera/1.8/docs/ContributedSoftware/volumeviewer/framevolumeviewer.html
)

"For unsigned data types, an initial threshold is set so that 1% of voxels"

The reason I ask is because it would be much simpler, given a known color
code and level, to standardize the import of files into Chimera for any
sort of publication, especially in the event that many molecular orbitals
needed to be visualized at once for a project.

Best,

-- 
Benjamin G. Looker
Graduate Student
Lancaster Group
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