[Chimera-users] chimera question
cjamesgrant at earthlink.net
cjamesgrant at earthlink.net
Wed Nov 9 12:34:52 PST 2005
Does chimera have the capability of automatically connecting the elements of a protein to reveal its overall shape. I am trying to determine the amino acid sequence of the attached protein, but I am having a hard time visualizing how the elements are connected to each other. I am new to this program, so any help would be greatly appreciated.
Thank you,
C Grant
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ATOM 920 N PPP A 1 37.846 6.055 34.570 1.00 42.20 N
TER
ATOM 921 CA PPP A 2 37.192 7.356 34.616 1.00 40.07 C
TER
ATOM 922 C PPP A 3 35.704 7.337 34.250 1.00 35.67 C
TER
ATOM 923 O PPP A 4 34.880 7.955 34.918 1.00 32.56 O
TER
ATOM 924 CB PPP A 5 37.909 8.337 33.684 1.00 43.94 C
TER
ATOM 925 CG PPP A 6 39.411 8.466 33.893 1.00 50.01 C
TER
ATOM 926 CD PPP A 7 40.097 9.158 32.719 1.00 55.54 C
TER
ATOM 927 OE1 PPP A 8 39.539 10.155 32.205 1.00 56.27 O
TER
ATOM 928 OE2 PPP A 9 41.188 8.704 32.306 1.00 57.91 O
TER
ATOM 929 N PPP A 10 35.345 6.618 33.197 1.00 36.15 N
TER
ATOM 930 CA PPP A 11 33.949 6.643 32.772 1.00 31.67 C
TER
ATOM 931 C PPP A 12 32.890 6.034 33.686 1.00 28.79 C
TER
ATOM 932 O PPP A 13 31.728 6.442 33.631 1.00 26.56 O
TER
ATOM 933 CB PPP A 14 33.802 6.087 31.347 1.00 34.01 C
TER
ATOM 934 CG1 PPP A 15 34.203 4.617 31.296 1.00 35.31 C
TER
ATOM 935 CG2 PPP A 16 34.640 6.935 30.395 1.00 33.32 C
TER
ATOM 936 CD1 PPP A 17 33.857 3.955 29.978 1.00 35.84 C
TER
ATOM 937 N PPP A 18 33.261 5.091 34.543 1.00 29.17 N
TER
ATOM 938 CA PPP A 19 32.258 4.519 35.448 1.00 29.71 C
TER
ATOM 939 C PPP A 20 31.594 5.649 36.241 1.00 30.17 C
TER
ATOM 940 O PPP A 21 30.368 5.774 36.275 1.00 26.46 O
TER
ATOM 941 CB PPP A 22 32.903 3.529 36.424 1.00 30.98 C
TER
ATOM 942 CG PPP A 23 31.948 2.496 36.958 1.00 32.10 C
TER
ATOM 943 CD1 PPP A 24 31.126 2.783 38.048 1.00 33.90 C
TER
ATOM 944 CD2 PPP A 25 31.883 1.230 36.382 1.00 30.32 C
TER
ATOM 945 CE1 PPP A 26 30.243 1.815 38.561 1.00 32.72 C
TER
ATOM 946 CE2 PPP A 27 31.008 0.257 36.880 1.00 31.57 C
TER
ATOM 947 CZ PPP A 28 30.189 0.550 37.973 1.00 33.34 C
TER
ATOM 948 N PPP A 29 32.415 6.483 36.871 1.00 29.49 N
TER
ATOM 949 CA PPP A 30 31.893 7.587 37.661 1.00 32.03 C
TER
ATOM 950 C PPP A 31 31.133 8.593 36.806 1.00 28.94 C
TER
ATOM 951 O PPP A 32 30.155 9.177 37.256 1.00 31.27 O
TER
ATOM 952 CB PPP A 33 33.030 8.290 38.401 1.00 33.41 C
TER
ATOM 953 CG PPP A 34 33.455 7.547 39.655 1.00 39.39 C
TER
ATOM 954 OD1 PPP A 35 32.766 6.576 40.038 1.00 38.69 O
TER
ATOM 955 OD2 PPP A 36 34.479 7.936 40.256 1.00 39.54 O
TER
ATOM 956 N PPP A 37 31.584 8.795 35.572 1.00 30.23 N
TER
ATOM 957 CA PPP A 38 30.918 9.736 34.676 1.00 28.51 C
TER
ATOM 958 C PPP A 39 29.525 9.202 34.324 1.00 29.02 C
TER
ATOM 959 O PPP A 40 28.537 9.948 34.300 1.00 24.84 O
TER
ATOM 960 CB PPP A 41 31.743 9.912 33.408 1.00 27.00 C
TER
ATOM 961 CG PPP A 42 33.032 10.680 33.609 1.00 31.76 C
TER
ATOM 962 SD PPP A 43 33.960 10.787 32.076 1.00 34.88 S
TER
ATOM 963 CE PPP A 44 35.409 11.753 32.643 1.00 44.81 C
TER
ATOM 964 N PPP A 45 29.450 7.902 34.058 1.00 25.17 N
TER
ATOM 965 CA PPP A 46 28.172 7.292 33.730 1.00 27.57 C
TER
ATOM 966 C PPP A 47 27.210 7.411 34.916 1.00 29.58 C
TER
ATOM 967 O PPP A 48 26.042 7.742 34.744 1.00 26.50 O
TER
ATOM 968 CB PPP A 49 28.379 5.825 33.332 1.00 27.88 C
TER
ATOM 969 CG PPP A 50 29.039 5.683 31.957 1.00 26.58 C
TER
ATOM 970 CD1 PPP A 51 29.677 4.304 31.782 1.00 27.69 C
TER
ATOM 971 CD2 PPP A 52 27.993 5.928 30.894 1.00 25.60 C
TER
ATOM 972 N PPP A 53 27.701 7.146 36.126 1.00 30.29 N
TER
ATOM 973 CA PPP A 54 26.859 7.250 37.323 1.00 30.47 C
TER
ATOM 974 C PPP A 55 26.319 8.681 37.465 1.00 30.24 C
TER
ATOM 975 O PPP A 56 25.142 8.901 37.770 1.00 28.73 O
TER
ATOM 976 CB PPP A 57 27.675 6.883 38.571 1.00 31.65 C
TER
ATOM 977 CG PPP A 58 28.078 5.415 38.757 1.00 32.52 C
TER
ATOM 978 CD1 PPP A 59 28.960 5.263 39.995 1.00 31.41 C
TER
ATOM 979 CD2 PPP A 60 26.825 4.574 38.903 1.00 34.82 C
TER
ATOM 980 N PPP A 61 27.193 9.655 37.237 1.00 31.33 N
TER
ATOM 981 CA PPP A 62 26.807 11.058 37.332 1.00 29.99 C
TER
ATOM 982 C PPP A 63 25.696 11.387 36.344 1.00 30.92 C
TER
ATOM 983 O PPP A 64 24.754 12.107 36.674 1.00 30.72 O
TER
ATOM 984 CB PPP A 65 28.016 11.950 37.077 1.00 31.52 C
TER
ATOM 985 N PPP A 66 25.801 10.854 35.128 1.00 30.31 N
TER
ATOM 986 CA PPP A 67 24.786 11.106 34.112 1.00 28.70 C
TER
ATOM 987 C PPP A 68 23.462 10.481 34.530 1.00 29.28 C
TER
ATOM 988 O PPP A 69 22.402 11.099 34.397 1.00 25.59 O
TER
ATOM 989 CB PPP A 70 25.208 10.534 32.736 1.00 30.74 C
TER
ATOM 990 OG1 PPP A 71 26.570 10.894 32.465 1.00 32.00 O
TER
ATOM 991 CG2 PPP A 72 24.320 11.087 31.631 1.00 26.11 C
TER
ATOM 992 N PPP A 73 23.520 9.253 35.036 1.00 27.92 N
TER
ATOM 993 CA PPP A 74 22.308 8.574 35.480 1.00 29.79 C
TER
ATOM 994 C PPP A 75 21.651 9.400 36.587 1.00 31.28 C
TER
ATOM 995 O PPP A 76 20.433 9.578 36.611 1.00 29.75 O
TER
ATOM 996 CB PPP A 77 22.638 7.178 36.009 1.00 33.27 C
TER
ATOM 997 OG PPP A 78 21.453 6.414 36.137 1.00 37.05 O
TER
ATOM 998 N PPP A 79 22.477 9.902 37.495 0.75 31.93 N
TER
ATOM 1000 CA PPP A 81 22.002 10.714 38.605 0.75 35.66 C
TER
ATOM 1002 C PPP A 83 21.299 11.971 38.091 0.75 35.19 C
TER
ATOM 1004 O PPP A 85 20.257 12.374 38.613 0.75 35.25 O
TER
ATOM 1006 CB PPP A 87 23.184 11.097 39.502 0.75 37.53 C
TER
ATOM 1008 OG PPP A 89 22.823 12.091 40.442 0.75 44.47 O
TER
ATOM 1010 N PPP A 91 21.867 12.579 37.054 1.00 33.53 N
TER
ATOM 1011 CA PPP A 92 21.300 13.788 36.471 1.00 34.09 C
TER
ATOM 1012 C PPP A 93 19.936 13.491 35.872 1.00 33.57 C
TER
ATOM 1013 O PPP A 94 18.995 14.265 36.052 1.00 30.11 O
TER
ATOM 1014 CB PPP A 95 22.240 14.355 35.401 1.00 33.55 C
TER
ATOM 1015 CG PPP A 96 21.671 15.529 34.624 1.00 38.74 C
TER
ATOM 1016 CD PPP A 97 21.559 16.787 35.478 1.00 38.05 C
TER
ATOM 1017 NE PPP A 98 21.157 17.944 34.679 1.00 37.87 N
TER
ATOM 1018 CZ PPP A 99 20.487 18.995 35.149 1.00 41.41 C
TER
ATOM 1019 NH1 PPP A 100 20.134 19.050 36.428 1.00 40.50 N
TER
ATOM 1020 NH2 PPP A 101 20.175 19.998 34.338 1.00 38.62 N
TER
ATOM 1021 N PPP A 102 19.831 12.371 35.158 1.00 34.61 N
TER
ATOM 1022 CA PPP A 103 18.564 11.963 34.549 1.00 35.32 C
TER
ATOM 1023 C PPP A 104 17.527 11.780 35.657 1.00 35.66 C
TER
ATOM 1024 O PPP A 105 16.362 12.136 35.497 1.00 34.73 O
TER
ATOM 1025 CB PPP A 106 18.727 10.634 33.796 1.00 35.15 C
TER
ATOM 1026 CG PPP A 107 19.241 10.779 32.386 1.00 37.79 C
TER
ATOM 1027 CD1 PPP A 108 19.459 12.035 31.824 1.00 42.06 C
TER
ATOM 1028 CD2 PPP A 109 19.521 9.650 31.623 1.00 40.99 C
TER
ATOM 1029 CE1 PPP A 110 19.955 12.163 30.522 1.00 43.38 C
TER
ATOM 1030 CE2 PPP A 111 20.017 9.768 30.323 1.00 41.00 C
TER
ATOM 1031 CZ PPP A 112 20.233 11.029 29.775 1.00 40.56 C
TER
ATOM 1032 N PPP A 113 17.967 11.217 36.778 1.00 38.40 N
TER
ATOM 1033 CA PPP A 114 17.094 10.983 37.924 1.00 40.56 C
TER
ATOM 1034 C PPP A 115 16.577 12.302 38.493 1.00 40.49 C
TER
ATOM 1035 O PPP A 116 15.382 12.458 38.729 1.00 41.13 O
TER
ATOM 1036 CB PPP A 117 17.845 10.215 39.012 1.00 40.70 C
TER
ATOM 1037 CG PPP A 118 16.942 9.590 40.068 1.00 44.55 C
TER
ATOM 1038 CD PPP A 119 17.648 8.459 40.810 1.00 48.45 C
TER
ATOM 1039 NE PPP A 120 18.981 8.841 41.275 1.00 50.08 N
TER
ATOM 1040 CZ PPP A 121 20.119 8.362 40.776 1.00 51.91 C
TER
ATOM 1041 NH1 PPP A 122 20.099 7.472 39.790 1.00 49.18 N
TER
ATOM 1042 NH2 PPP A 123 21.283 8.770 41.266 1.00 51.82 N
TER
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