[Chimera-users] Selecting Protein portions

[Elaine Meng]

Dear Reiner,
Chimera does not do any automated docking.   Instead, it provides a  
tool (ViewDock) for viewing your results from the separate program  
DOCK.  For information about DOCK, see
http://dock.compbio.ucsf.edu/

The DOCK people also have mailing lists for questions and discussion  
about their program, see
http://dock.compbio.ucsf.edu/contact_info/index.htm

More generally, different docking programs handle the problem  
differently, so it will depend on what you decide to use.
I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html

On Nov 20, 2005, at 5:44 AM, Reiner Villavicencio wrote:

> Dear all,
>  
>      I have read a couple of literature which uses the Chimera  
> program. Before performing a docking run, most of them selects only  
> the relevant residues within a certain region (for example in a 20  
> angstrom core). May I ask how is this done in Chimera? I mean do the  
> "unrelevant" portions get deleted?
>      Thank you and good day
>  
>                                                                   - RV
>
>
>> "Its hard to hold on to something that can never be yours in anyway
>> you want... something that wasn’t really yours to begin with... you
>> just have to go on and accept the fact that while good things never
>> last some don’t even start...."Send instant messages to your online  
>> friends  
>> http:// 
>> uk.messenger.yahoo.com_______________________________________________
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: text/enriched
Size: 2071 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20051120/480ef158/attachment.bin>