[Chimera-users] new version available

Charlie Moad cwmoad at gmail.com
Tue Oct 25 10:38:49 PDT 2005


The new pyconfig file worked.  Thanks for walking me through this.

- Charlie

On 10/25/05, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> My guess about Charlie's problem is that we are giving him the Python
> header files from our 64-bit Alpha machine.  Perhaps the pyconfig.h you
> attached will cure this ill.
>
> --Eric
>
> On Oct 25, 2005, at 10:31 AM, Greg Couch wrote:
>
> > There are lots of special requirements for building chimera.  A lot of
> > the
> > work we do is to get chimera running on a variety of platforms.  For
> > instance, the Linux chimera is built on Red Hat 7.1 using gcc 3.3.3.
> > We
> > build on an ancient version of Linux so chimera will run on most, if
> > not
> > all, of the current versions of Linux.  I've attached the pyconfig.h
> > file
> > from our Linux build, which is probably different than the
> > chimera/include/python2.4/pyconfig.h that you have.   For compiler
> > flags,
> > we always pass in "-ansi -pthread -fPIC -malign-double" to gcc.
> >
> >       - Greg
> >
> > On Tue, 25 Oct 2005, Charlie Moad wrote:
> >
> >> Date: Tue, 25 Oct 2005 11:55:55 -0500
> >> From: Charlie Moad <cwmoad at gmail.com>
> >> To: Thomas Goddard <goddard at cgl.ucsf.edu>
> >> Cc: chimera-users at cgl.ucsf.edu
> >> Subject: Re: [Chimera-users] new version available
> >>
> >> Thanks for posting these.  Unfortunately I am hitting a weird error on
> >> any cpython module I try to build.
> >>
> >> In file included from
> >> /usr/local/chimera/include/python2.4/Python.h:55,
> >> /usr/local/chimera/include/python2.4/pyport.h:612:2: error: #error
> >> "LONG_BIT definition appears wrong for platform (bad gcc/glibc
> >> config?)."
> >> error: command 'gcc' failed with exit status 1
> >>
> >> There a lot of google hits referencing this error, but nothing recent
> >> or helpful.  For some reason the architecture is incorrectly
> >> identified as 64-bit.  I should note that the stock python does not
> >> generate this error.  Are there any special requirements for build
> >> with chimera?
> >>
> >> - Charlie
> >>
> >> On 10/24/05, Thomas Goddard <goddard at cgl.ucsf.edu> wrote:
> >>> Hi Charlie,
> >>>
> >>>   You're right, the header files I pointed you to in the previous
> >>> email only
> >>> inluded Chimera headers, not Python headers.  Sorry about that.
> >>>
> >>>   Here are the Chimera 2181 (same as 2180) headers for Chimera and
> >>> Python.
> >>>
> >>>
> >>> https://www.cgl.ucsf.edu/cgi-bin/chimera-get.py?file=source/chimera
> >>> -1.2181-headers.tar.gz
> >>>
> >>> These will be shown on the Chimera source code page
> >>>
> >>>         http://www.cgl.ucsf.edu/chimera/sourcecode.html
> >>>
> >>> when our web pages are updated tonight.
> >>>
> >>>         Tom
> >>>
> >>
> >> _______________________________________________
> >> Chimera-users mailing list
> >> Chimera-users at cgl.ucsf.edu
> >> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
> > <pyconfig.h>_______________________________________________
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> > Chimera-users at cgl.ucsf.edu
> > http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
>




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