[Chimera-users] imod model viewing

Tom Goddard goddard at cgl.ucsf.edu
Tue May 8 17:57:47 PDT 2007


Hi Jeff,

  The Chimera IMOD model file reader reads through all the data in the 
IMOD file but ignores everything except the meshes.  Here is the file 
format specification I used to write the code

    http://bio3d.colorado.edu/imod/doc/binspec.html

The Chimera Python code is in the IMOD directory obtained from the 
Chimera experimental features web page

    http://www.cgl.ucsf.edu/chimera/experimental/experimental.html

in files

    IMOD/imod.py
    IMOD/imod_spec.py

That code could be improved to display the contour data although Chimera 
does not have a high efficiency rendering of 1-dimensional curves.  
Using path tracer markers and links (equivalent to atoms and bonds) 
would consume alot of memory (a few kbytes per point).

    Tom




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