[Chimera-users] Morph surfaces

[Craig Yoshioka]

Thanks, is there a way I can specify different chains as separate maps  
using molmap?  I'm trying to create three distinctly colored regions,  
one semi-transparent.

Chimera is fantastic software, btw.  Thanks to all of you.


On Apr 23, 2008, at 3:40 PM, Eric Pettersen wrote:

> On Apr 23, 2008, at 3:26 PM, Elaine Meng wrote:
>
>>
>> Hi Craig,
>>
>>> the script would look like
>>>
>>> 	molmap #2 8.5 gridSpacing 1.5
>>> 	volume #2 color 1,0,0,.5 step 1
>>>
>>
>> You might want to string those two commands together on the same
>> line, separated by a semicolon, to avoid display of the intermediate
>> state (before you colored the surface red).
>
> You don't need to put them on the same line.  The MD Movie tool  
> executes these scripts as if they were being handled by the 'read'  
> command (no display updates between commands) rather than the  
> 'source' command.
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>

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