[Chimera-users] minimize command

[Elaine Meng]

Hi Snoze,
The command for saving coordinates is "write", see

http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/write.html

You will also want to use the "format mol2" option, and perhaps other  
options described on that page.
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html




On Feb 27, 2008, at 4:04 PM, snoze pa wrote:

> Elaine,
> I guess i can use either 'minimize' or "addh and addcharge"  
> otherwise it will run the antechamber twice.minimize is working  
> fine but i can not save the result in mol2 format using COMMAND  
> option.  I try wrtiemol2 but it is not accepting it as a command.  
> save is also not saving in mol2 format.
> Any help, thanks in advance.
> s