[Chimera-users] mmaker - superposing two structures based on a subset of a chain

[Andrea Rossi]

Dear Chimera Team,

I was wondering if it is possible to superpose two structures based on a
subset of a chain (a domain for example). I tried the command:

mmaker #0:1-100.H #2:1-100.h

but Chimera doesn't seem to take into account the residue selection.

Superposing according to a subset of a chain is particularly useful when the
chain is formed by two or more domains and the domains are connected by a
flexible linker (as in the case of antibodies). I can provide more specific
examples if needed.

Andrea
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